RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MOKQ9UQ07 419 aa15.4■□□□□ 0.06
SHKBP1-223ENST00000600552 FBN1P35555 2871 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 LIPT2A6NK58 231 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 PDLIM1O00151 329 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 HDAC3O15379 428 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 WNT11O96014 354 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 PRG2P13727 222 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 RPS4Y1P22090 263 aaKnown RBP15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 MPGP29372 298 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 GTDC1Q4AE62 458 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 LIN52Q52LA3 116 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 AP1ARQ63HQ0 302 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 ATG16L1Q676U5 607 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 HIPK1Q86Z02 1210 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 ZNF440Q8IYI8 595 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 LRRC34Q8IZ02 419 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 CLIP4Q8N3C7 705 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 ZIC4Q8N9L1 334 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 OR10H5Q8NGA6 315 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 SLC25A36Q96CQ1 311 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 KCNS3Q9BQ31 491 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 ADAM19Q9H013 955 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 ZNF443Q9Y2A4 671 aaPredicted RBP15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 PMF1-BGLAPU3KQ54 211 aa15.39■□□□□ 0.05
SHKBP1-223ENST00000600552 LGI1O95970 557 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 BMP4P12644 408 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 APOBEC3AP31941 199 aaPredicted RBP15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 WDR4P57081 412 aaKnown RBP15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 DSCR9P59020 149 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 DSTNP60981 165 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TUBA1BP68363 451 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TUBA4AP68366 448 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TXNL4AP83876 142 aaKnown RBP15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 HOXC5Q00444 222 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 LARS2Q15031 903 aaKnown RBP15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 MAPK11Q15759 364 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 GSTA3Q16772 222 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TMEM249Q2WGJ8 235 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 C6orf10Q5SRN2 563 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 WBP2NLQ6ICG8 309 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 ZNF544Q6NX49 715 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 PODNL1Q6PEZ8 512 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 VHLLQ6RSH7 139 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TUBA1AQ71U36 451 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 SPATA3Q8NHX4 192 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TNFRSF13CQ96RJ3 184 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 THAP1Q9NVV9 213 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 TMEM45AQ9NWC5 275 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 ZNF232Q9UNY5 417 aa15.38■□□□□ 0.05
SHKBP1-223ENST00000600552 A0A096LPE4 126 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 A0A1W2PPZ6 126 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 TMEM120BA0PK00 339 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 CDHR4A6H8M9 788 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 TMEM247A6NEH6 219 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 AQP7P3A6NL99 342 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 A8MVM7 634 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 NR5A2O00482 541 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 FAAHO00519 579 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 FRS3O43559 492 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 IL6P05231 212 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 ACAA2P42765 397 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 SELENOPP49908 381 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 CRISP3P54108 245 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 LRRC74AQ0VAA2 488 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 SLC9B1Q4ZJI4 515 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 C1orf140Q5VVS0 124 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 NIPAL3Q6P499 406 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 KDM8Q8N371 416 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 C17orf78Q8N4C9 275 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 POMGNT2Q8NAT1 580 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 GLB1L3Q8NCI6 653 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 C1orf162Q8NEQ5 155 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 SLC38A5Q8WUX1 472 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 NANOS1Q8WY41 292 aaKnown RBP15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 TMEM45BQ96B21 275 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 C3orf49Q96BT1 292 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 TMEM19Q96HH6 336 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 VRK1Q99986 396 aaPredicted RBP15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 TPT1P8Q9HAU6 139 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 CALML5Q9NZT1 146 aa15.37■□□□□ 0.05
SHKBP1-223ENST00000600552 ZNF587BE7ETH6 402 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 IDO1P14902 403 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 MAP2K6P52564 334 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 EFNA4P52798 201 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 UBE2NP61088 152 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 IL1RL1Q01638 556 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 PDCD4Q53EL6 469 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 C6orf52Q5T4I8 152 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 PRAMEF8Q5VWM4 474 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 PRAMEF7Q5VXH5 474 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 ABHD12BQ7Z5M8 362 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 SERPINA11Q86U17 422 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 OR9I1Q8NGQ6 314 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 VPS33AQ96AX1 596 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 ITCHQ96J02 903 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 ALKBH3Q96Q83 286 aaPredicted RBP15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 SF3B5Q9BWJ5 86 aaKnown RBP15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 BEX2Q9BXY8 128 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 AMBRA1Q9C0C7 1298 aa15.36■□□□□ 0.05
SHKBP1-223ENST00000600552 RMND5AQ9H871 391 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms