RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GTF2IRD2Q86UP8 949 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 TMEM99Q8N816 258 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 MFSD8Q8NHS3 518 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 TAAR8Q969N4 342 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 TMEM27Q9HBJ8 222 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 ADA2Q9NZK5 511 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 KLHL9Q9P2J3 617 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 RPS6KB2Q9UBS0 482 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 FOXD3Q9UJU5 478 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 PROCRQ9UNN8 238 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 NOTCH2Q04721 2471 aa17.32■□□□□ 0.36
SHKBP1-221ENST00000599833 NAV2Q8IVL1 2488 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 ELOA3DA6NLF2 546 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 EIF1BO60739 113 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 SMNDC1O75940 238 aaKnown RBP eCLIP17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 AKR7A3O95154 331 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 PLGP00747 810 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 BGLAPP02818 100 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 GPIP06744 558 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 COX6B1P14854 86 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 UQCRC1P31930 480 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 NCALDP61601 193 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 FAM27E3Q08E93 113 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 ELOA3BQ3SY89 546 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 RINLQ6ZS11 566 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 C22orf34Q6ZV56 151 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 GDF7Q7Z4P5 450 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 DEFB107AQ8IZN7 70 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 ZIC4Q8N9L1 334 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 ELOA3Q8NG57 546 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 PROX1Q92786 737 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 CDRT15Q96T59 188 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 TMEM43Q9BTV4 400 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 A4GNTQ9UNA3 340 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 SNX13Q9Y5W8 968 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 VPS13CQ709C8 3753 aa17.31■□□□□ 0.36
SHKBP1-221ENST00000599833 POLQO75417 2590 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 TRAPPC13A5PLN9 417 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 FFAR1O14842 300 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 PRSS23O95084 383 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 SERPINA1P01009 418 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 IFNA14P01570 189 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 PTNP21246 168 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 CALB2P22676 271 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 RPS5P46782 204 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 CTBP2P56545 445 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 IQCCQ4KMZ1 466 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 NHLRC1Q6VVB1 395 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 TRPM8Q7Z2W7 1104 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 GABRG1Q8N1C3 465 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 FAM86B1Q8N7N1 296 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 OR6S1Q8NH40 331 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 PIGXQ8TBF5 258 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 ZNF775Q96BV0 537 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 SLC41A3Q96GZ6 507 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 AMBRA1Q9C0C7 1298 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 C12orf49Q9H741 205 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 GORASP2Q9H8Y8 452 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 CRIM1Q9NZV1 1036 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 B3GAT1Q9P2W7 334 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 SLC9A8Q9Y2E8 581 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 FLVCR1Q9Y5Y0 555 aa17.3■□□□□ 0.36
SHKBP1-221ENST00000599833 ALPK2Q86TB3 2170 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 TRAV36DV7A0A075B6V5 113 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 B2RBV5 119 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 SEMG1P04279 462 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 MSX2P35548 267 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 OR3A2P47893 321 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 PIN1Q13526 163 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 TMEM201Q5SNT2 666 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 OTUD3Q5T2D3 398 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 GLYATQ6IB77 296 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 C5orf46Q6UWT4 87 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 C16orf89Q6UX73 402 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 NKAIN4Q8IVV8 208 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 MCEMP1Q8IX19 187 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 TPD52L3Q96J77 140 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 HSH2DQ96JZ2 352 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 MOGAT1Q96PD6 335 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 TACO1Q9BSH4 297 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 POLR2J2Q9GZM3 115 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 POLR2J3Q9H1A7 115 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 MAN2C1Q9NTJ4 1040 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 DCAF13Q9NV06 445 aaKnown RBP17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 SLC7A7Q9UM01 511 aa17.29■□□□□ 0.36
SHKBP1-221ENST00000599833 ABCA4P78363 2273 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 FAM221AA4D161 298 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 LRRN3E7EW58 273 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 UBOX5O94941 541 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 OR5F1O95221 314 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 AHSA1O95433 338 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 CD79BP40259 229 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 SAMD4BQ5PRF9 694 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 FAM69AQ5T7M9 428 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 STAC2Q6ZMT1 411 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 LINC01560Q8TB33 94 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 ZHX1-C8orf76Q96EF9 292 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 C14orf79Q96F83 325 aa17.28■□□□□ 0.36
SHKBP1-221ENST00000599833 MEPEQ9NQ76 525 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms