RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 UPK3AO75631 287 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 VENTXO95231 258 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 STAMBPO95630 424 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 GSNP06396 782 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CSF3P09919 207 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CECR9P0C854 216 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 BMP4P12644 408 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 APEX1P27695 318 aaKnown RBP7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 MPGP29372 298 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CHI3L1P36222 383 aaPredicted RBP7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SRP14P37108 136 aaKnown RBP7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CDKN2CP42773 168 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 POLR2HP52434 150 aaKnown RBP7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CLDN8P56748 225 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 HGFACQ04756 655 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 MSMPQ1L6U9 139 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SPANXN4Q5MJ08 99 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 COX20Q5RI15 118 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 ATAD3BQ5T9A4 648 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SAXO2Q658L1 398 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 KLHL24Q6TFL4 600 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 THSD4Q6ZMP0 1018 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 RNF130Q86XS8 419 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CDK20Q8IZL9 346 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 OR1K1Q8NGR3 316 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 TCP10LQ8TDR4 215 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF837Q96EG3 531 aaPredicted RBP7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 TEX37Q96LM6 180 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC38A2Q96QD8 506 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC38A1Q9H2H9 487 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 NELFAQ9H3P2 528 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 AKTIPQ9H8T0 292 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 EXD2Q9NVH0 621 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC35A3Q9Y2D2 325 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC9A8Q9Y2E8 581 aa7.5□□□□□ -1.21
SHKBP1-220ENST00000599716 CMYA5Q8N3K9 4069 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 LOC390937A0A1W2PQ73 354 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 LIPT2A6NK58 231 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 hCG_2039718K7EN88 272 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 RNASET2O00584 256 aaKnown RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 ANKRD28O15084 1053 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 KRT33AO76009 404 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 AK1P00568 194 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 PGRP06401 933 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 PRG2P13727 222 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 DAOP14920 347 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 HNF1AP20823 631 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 UQCRC2P22695 453 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 THBS4P35443 961 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 KHKP50053 298 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 P2RY4P51582 365 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC35A1P78382 337 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 NAAAQ02083 359 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 EMX2Q04743 252 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 NPRL3Q12980 569 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 MRPL2Q5T653 305 aaKnown RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 NIPAL3Q6P499 406 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 ANKRD16Q6P6B7 361 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 PAQR6Q6TCH4 344 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 SSX8Q7RTT4 187 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 VRK2Q86Y07 508 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 CADM2Q8N3J6 435 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 C17orf78Q8N4C9 275 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 ZNF781Q8N8C0 355 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 C1orf162Q8NEQ5 155 aaPredicted RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 MIPOL1Q8TD10 442 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 BCL2L2Q92843 193 aaPredicted RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 DDIT4LQ96D03 193 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC35A5Q9BS91 424 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 NAA11Q9BSU3 229 aaPredicted RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 DPY30Q9C005 99 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 C20orf27Q9GZN8 174 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 SAP130Q9H0E3 1048 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 MARCOQ9UEW3 520 aaPredicted RBP7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 MID2Q9UJV3 735 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 PCDHGB4Q9UN71 923 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 TRAPPC4Q9Y296 219 aa7.49□□□□□ -1.21
SHKBP1-220ENST00000599716 TMEM129A0AVI4 362 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 AGAP5A6NIR3 686 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 B9A039 149 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 NDUFS8O00217 210 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 WNT9BO14905 357 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 FRS3O43559 492 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 DNPH1O43598 174 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 TCF21O43680 179 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 WNT11O96014 354 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 CRYAAP02489 173 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 TCN1P20061 433 aaPredicted RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 SLC1A3P43003 542 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 IDH3GP51553 393 aaPredicted RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 UBE2NP61088 152 aaKnown RBP7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 HPCAP84074 193 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 HOXC5Q00444 222 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 TGFBR3Q03167 851 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 EPS8Q12929 822 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 SQLEQ14534 574 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 MAPK11Q15759 364 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 ZSWIM7Q19AV6 140 aa7.48□□□□□ -1.21
SHKBP1-220ENST00000599716 FAM174BQ3ZCQ3 159 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms