RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 OR5B2Q96R09 309 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 PITX2Q99697 317 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 ANKRD60Q9BZ19 345 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 SLC6A15Q9H2J7 730 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 IL20Q9NYY1 176 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 B3GNT3Q9Y2A9 372 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 HDGFL3Q9Y3E1 203 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 GMPPBQ9Y5P6 360 aa13.2□□□□□ -0.3
VRK3-212ENST00000596814 FTCDNL1E5RQL4 147 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 E9PQ18 207 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 LINC01387J3KSC0 135 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 CLIC3O95833 236 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 HIST1H2ABP04908 130 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 GNAO1P09471 354 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 IMPDH2P12268 514 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 BMP7P18075 431 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TPD52P55327 224 aaPredicted RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 FXYD6P3P58550 94 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 RPS4XP62701 263 aaKnown RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 SLC10A1Q14973 349 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 MFSD13AQ14CX5 517 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 OR7A5Q15622 319 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TMEM176BQ3YBM2 270 aaPredicted RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 RNFT1Q5M7Z0 435 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 SMARCD3Q6STE5 483 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 HIST3H2AQ7L7L0 130 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 CHERPQ8IWX8 916 aaKnown RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 C9orf43Q8TAL5 461 aaPredicted RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 HIST1H2ACQ93077 130 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 CRELD1Q96HD1 420 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 HRASLS5Q96KN8 279 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 SAMD8Q96LT4 415 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 CNBD2Q96M20 576 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 KLHL15Q96M94 604 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TAPBPLQ9BX59 468 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 ZDHHC11Q9H8X9 412 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 MCCC2Q9HCC0 563 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 ACKR4Q9NPB9 350 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 NDRG4Q9ULP0 352 aaKnown RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 LRCH1Q9Y2L9 728 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 HIF3AQ9Y2N7 669 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 A0A1W2PNR3 127 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 LIPT2A6NK58 231 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 DENRO43583 198 aaKnown RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 PTP4A3O75365 173 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 NDUFB2O95178 105 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 FAM87AP0C7U9 286 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 POU3F2P20265 443 aaPredicted RBP13.19□□□□□ -0.3
VRK3-212ENST00000596814 GRPRP30550 384 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 C19orf57Q0VDD7 668 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 FHL1Q13642 323 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 INAQ16352 499 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 LINC00303Q3SY05 128 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 ANKDD1AQ495B1 522 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 GXYLT1Q4G148 440 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 CLEC12AQ5QGZ9 265 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TMEM236Q5W0B7 351 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 SLC27A4Q6P1M0 643 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 USP51Q70EK9 711 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 SLC43A2Q8N370 569 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 IQCF1Q8N6M8 205 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TNFRSF13CQ96RJ3 184 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TSSK6Q9BXA6 273 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 ASPNQ9BXN1 380 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 SLC25A19Q9HC21 320 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 ALKBH4Q9NXW9 302 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 IL20RAQ9UHF4 553 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 TUBD1Q9UJT1 453 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 SLC6A5Q9Y345 797 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 CORINQ9Y5Q5 1042 aa13.19□□□□□ -0.3
VRK3-212ENST00000596814 M0R082 166 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 MYF6P23409 242 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 GGT2P36268 569 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 RPS6KA3P51812 740 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 SMSP52788 366 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 PRPS1P60891 318 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 IL18R1Q13478 541 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 MED21Q13503 144 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 SGCBQ16585 318 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 ZNF691Q5VV52 312 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 SLX4IPQ5VYV7 408 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 THSD4Q6ZMP0 1018 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 SETD9Q8NE22 299 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 OR5J2Q8NH18 312 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 ZNF417Q8TAU3 575 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 FAM81AQ8TBF8 368 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 MIB2Q96AX9 1013 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 MUS81Q96NY9 551 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 ZNF587Q96SQ5 575 aaPredicted RBP13.18□□□□□ -0.3
VRK3-212ENST00000596814 APOL4Q9BPW4 351 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 NDEL1Q9GZM8 345 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 DEFB127Q9H1M4 99 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 ZNF71Q9NQZ8 489 aaPredicted RBP13.18□□□□□ -0.3
VRK3-212ENST00000596814 MRPL39Q9NYK5 338 aaKnown RBP13.18□□□□□ -0.3
VRK3-212ENST00000596814 LHX6Q9UPM6 363 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 LIPGQ9Y5X9 500 aa13.18□□□□□ -0.3
VRK3-212ENST00000596814 BLOC1S5-TXNDC5H3BN57 136 aa13.17□□□□□ -0.3
VRK3-212ENST00000596814 SEC14L5O43304 696 aa13.17□□□□□ -0.3
VRK3-212ENST00000596814 FZD7O75084 574 aa13.17□□□□□ -0.3
VRK3-212ENST00000596814 PMS2P2O95744 297 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms