RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TAB1Q15750 504 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 OTUD3Q5T2D3 398 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-205ENST00000595028 FBXW9Q5XUX1 488 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 LSMEM1Q8N8F7 131 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 BHLHE22Q8NFJ8 381 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-205ENST00000595028 STK35Q8TDR2 534 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 USB1Q9BQ65 265 aaKnown RBP13.35□□□□□ -0.27
TRIM28-205ENST00000595028 TAPBPLQ9BX59 468 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 TRIM2Q9C040 744 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 C12orf10Q9HB07 376 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 KLHL14Q9P2G3 628 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 RPS6KB2Q9UBS0 482 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 MALT1Q9UDY8 824 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 SLC13A4Q9UKG4 626 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 FLVCR1Q9Y5Y0 555 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 ARID1AO14497 2285 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 DSCAMO60469 2012 aa13.35□□□□□ -0.27
TRIM28-205ENST00000595028 A0A1B0GWA3 101 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 ELOA3DA6NLF2 546 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-205ENST00000595028 BBIP1A8MTZ0 92 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 MRPL33O75394 65 aaKnown RBP13.34□□□□□ -0.27
TRIM28-205ENST00000595028 MFN2O95140 757 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 AKR7A3O95154 331 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 IGHV3-9P01782 118 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 FOSL1P15407 271 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 CD53P19397 219 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 NTF4P34130 210 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 MDH1P40925 334 aaKnown RBP13.34□□□□□ -0.27
TRIM28-205ENST00000595028 EGR4Q05215 589 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 DEFB113Q30KQ7 82 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 ELOA3BQ3SY89 546 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 REP15Q6BDI9 236 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 SEZ6L2Q6UXD5 910 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 CASP12Q6UXS9 341 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 Q71RC1 249 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-205ENST00000595028 SLC30A8Q8IWU4 369 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 TMEM99Q8N816 258 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 ELOA3Q8NG57 546 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 OR52E4Q8NGH9 312 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 C10orf82Q8WW14 230 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 TMEM45BQ96B21 275 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 PLPPR2Q96GM1 343 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 PTDSS2Q9BVG9 487 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 SF3B5Q9BWJ5 86 aaKnown RBP13.34□□□□□ -0.27
TRIM28-205ENST00000595028 UBTD1Q9HAC8 227 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 ADPRHL2Q9NX46 363 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 CAPN7Q9Y6W3 813 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 NBEAL1Q6ZS30 2694 aa13.34□□□□□ -0.27
TRIM28-205ENST00000595028 FBN1P35555 2871 aaKnown RBP13.33□□□□□ -0.28
TRIM28-205ENST00000595028 A0A0B4J2E0 115 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 A0A1B0GX12 115 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 FTCDNL1E5RQL4 147 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 MRASO14807 208 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 ATP8B1O43520 1251 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 FZD7O75084 574 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 OPN1SWP03999 348 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 P2RY4P51582 365 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 CYLC2Q14093 348 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-205ENST00000595028 FAM91A1Q658Y4 838 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 ALKBH2Q6NS38 261 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 NANOGP8Q6NSW7 305 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 ZNF704Q6ZNC4 412 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-205ENST00000595028 C20orf204Q6ZNR8 217 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 SNX32Q86XE0 403 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 UBE2J2Q8N2K1 259 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 SMYD1Q8NB12 490 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 OR9K2Q8NGE7 335 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 OR8J3Q8NGG0 315 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 OR10A6Q8NH74 314 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 MFSD8Q8NHS3 518 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 DNAJA4Q8WW22 397 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-205ENST00000595028 HSD17B8Q92506 261 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 ZNF317Q96PQ6 595 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-205ENST00000595028 TMEM204Q9BSN7 226 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 EVA1AQ9H8M9 152 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 NANOGQ9H9S0 305 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 FN1P02751 2386 aaKnown RBP13.33□□□□□ -0.28
TRIM28-205ENST00000595028 PLCE1Q9P212 2302 aa13.33□□□□□ -0.28
TRIM28-205ENST00000595028 IGKV1D-42A0A075B6H8 117 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 KIAA1324LA8MWY0 1029 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-205ENST00000595028 SLC22A2O15244 555 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 VAMP5O95183 116 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 PNMTP11086 282 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 GGT1P19440 569 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 GZMMP51124 257 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 STK11Q15831 433 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 ACKR1Q16570 336 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 MMEL1Q495T6 779 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 RABL3Q5HYI8 236 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 ALG10BQ5I7T1 473 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 INTS11Q5TA45 600 aaKnown RBP13.32□□□□□ -0.28
TRIM28-205ENST00000595028 ULK3Q6PHR2 472 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 C5orf46Q6UWT4 87 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 PATL1Q86TB9 770 aaKnown RBP13.32□□□□□ -0.28
TRIM28-205ENST00000595028 GPAT4Q86UL3 456 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 RANBP3LQ86VV4 465 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-205ENST00000595028 ZNF433Q8N7K0 673 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-205ENST00000595028 TAMM41Q96BW9 452 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 LRRC58Q96CX6 371 aa13.32□□□□□ -0.28
TRIM28-205ENST00000595028 ARHGDIGQ99819 225 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms