RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PGAM4Q8N0Y7 254 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 OR4D11Q8NGI4 311 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 BCAS4Q8TDM0 211 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 ADAMTS16Q8TE57 1224 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 FAM222BQ8WU58 562 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 NSL1Q96IY1 281 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 TPD52L3Q96J77 140 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 ZNF300Q96RE9 604 aaPredicted RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 EPYCQ99645 322 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 SF3B5Q9BWJ5 86 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 POLR2J2Q9GZM3 115 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 PCDHAC1Q9H158 963 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 POLR2J3Q9H1A7 115 aaKnown RBP13.36□□□□□ -0.27
UPF1-202ENST00000594243 CRIM1Q9NZV1 1036 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 CELSR2Q9HCU4 2923 aa13.36□□□□□ -0.27
UPF1-202ENST00000594243 TRAV36DV7A0A075B6V5 113 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 TRAPPC13A5PLN9 417 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 AKR7A3O95154 331 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 EPXP11678 715 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 UGT2B10P36537 528 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 OR3A2P47893 321 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 TLE4Q04727 773 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 FAM69AQ5T7M9 428 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 TTC33Q6PID6 262 aaPredicted RBP13.35□□□□□ -0.27
UPF1-202ENST00000594243 TFAP2EQ6VUC0 442 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 LINC00114Q6XXX2 140 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 MED12LQ86YW9 2145 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 TMEM99Q8N816 258 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 OR6S1Q8NH40 331 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 LINC01560Q8TB33 94 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 ZNF775Q96BV0 537 aaPredicted RBP13.35□□□□□ -0.27
UPF1-202ENST00000594243 SLC25A36Q96CQ1 311 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 KTI12Q96EK9 354 aaPredicted RBP13.35□□□□□ -0.27
UPF1-202ENST00000594243 DACH2Q96NX9 599 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 TMEM43Q9BTV4 400 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 HDHD5Q9BXW7 423 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 KLHL4Q9C0H6 718 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 PARPBPQ9NWS1 579 aa13.35□□□□□ -0.27
UPF1-202ENST00000594243 GMPR2Q9P2T1 348 aaKnown RBP13.35□□□□□ -0.27
UPF1-202ENST00000594243 NOSIPQ9Y314 301 aaKnown RBP13.35□□□□□ -0.27
UPF1-202ENST00000594243 AQP7P3A6NL99 342 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 ZNF814B7Z6K7 855 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 FTCDNL1E5RQL4 147 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 CASKO14936 926 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 MRPL33O75394 65 aaKnown RBP13.34□□□□□ -0.27
UPF1-202ENST00000594243 CNOT4O95628 575 aaKnown RBP13.34□□□□□ -0.27
UPF1-202ENST00000594243 PRF1P14222 555 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 GGT1P19440 569 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 IFNA8P32881 189 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 OR1E2P47887 323 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 SLC25A3Q00325 362 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 SLC17A1Q14916 467 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 MFSD13AQ14CX5 517 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 GLYATQ6IB77 296 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 CBLL1Q75N03 491 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 ZNF100Q8IYN0 542 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 TAAR8Q969N4 342 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 FAM162AQ96A26 154 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 MPP4Q96JB8 637 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 CDRT15Q96T59 188 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 PTDSS2Q9BVG9 487 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 MCCC2Q9HCC0 563 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 C6orf203Q9P0P8 240 aaPredicted RBP13.34□□□□□ -0.27
UPF1-202ENST00000594243 SLC7A7Q9UM01 511 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 RASD1Q9Y272 281 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 GPR52Q9Y2T5 361 aa13.34□□□□□ -0.27
UPF1-202ENST00000594243 PCNX1Q96RV3 2341 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 IGKV1D-42A0A075B6H8 117 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 SH3D21A4FU49 640 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 B2RBV5 119 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 RAMP1O60894 148 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 ZNF682O95780 498 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 SERPINA1P01009 418 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 PPP3CBP16298 524 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 TNFRSF1BP20333 461 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 CALB2P22676 271 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 TAS2R41P59536 307 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 DAZAP2Q15038 168 aaPredicted RBP13.33□□□□□ -0.28
UPF1-202ENST00000594243 P2RY6Q15077 328 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 SPATS1Q496A3 300 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 SAMD4BQ5PRF9 694 aaKnown RBP13.33□□□□□ -0.28
UPF1-202ENST00000594243 DEF8Q6ZN54 512 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 FKBP9P1Q75LS8 142 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 GPAT4Q86UL3 456 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 SLC41A3Q96GZ6 507 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 OR10A4Q9H209 315 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 ZNF226Q9NYT6 803 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 EGFL7Q9UHF1 273 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 RPS6KA6Q9UK32 745 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 FLVCR1Q9Y5Y0 555 aa13.33□□□□□ -0.28
UPF1-202ENST00000594243 MYO9AB2RTY4 2548 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 FZD7O75084 574 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 OR5F1O95221 314 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 GOSR1O95249 250 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 ADAP00813 363 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 THY1P04216 161 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 THRBP10828 461 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 HSD17B1P14061 328 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 NCK1P16333 377 aa13.32□□□□□ -0.28
UPF1-202ENST00000594243 PSMB1P20618 241 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms