RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 C1orf140Q5VVS0 124 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 GALNTL5Q7Z4T8 443 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 B3GNT8Q7Z7M8 397 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 MEX3DQ86XN8 651 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 MARCH9Q86YJ5 346 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CPOQ8IVL8 374 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 GPALPP1Q8IXQ4 340 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 EXD3Q8N9H8 876 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 GOT1L1Q8NHS2 421 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 MCFD2Q8NI22 146 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 BRIX1Q8TDN6 353 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 ZNF501Q96CX3 271 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 FAM173AQ9BQD7 235 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 BCL2L10Q9HD36 194 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 PAQR5Q9NXK6 330 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 CHRNA9Q9UGM1 479 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 LRRC42Q9Y546 428 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 HSPE1-MOB4S4R3N1 261 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CHP2O43745 196 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 MITFO75030 526 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 PEBP1P30086 187 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 PCBD1P61457 104 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ACTA2P62736 377 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ACTG2P63267 376 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 TSPAN31Q12999 210 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SELENBP1Q13228 472 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SMIM15Q7Z3B0 74 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 PDSS2Q86YH6 399 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CLIP4Q8N3C7 705 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 JAGN1Q8N5M9 183 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ARL6IP6Q8N6S5 226 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 OR51L1Q8NGJ5 315 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 KLHL15Q96M94 604 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 DDA1Q9BW61 102 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SEMA4CQ9C0C4 833 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 FAM118AQ9NWS6 357 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SLC7A11Q9UPY5 501 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 FNDC1Q4ZHG4 1894 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 A0A087WZY1 265 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 FCMRO60667 390 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 IL2RAP01589 272 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ANKRD34CP0C6C1 535 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 PIGAP37287 484 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 LSSP48449 732 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ZNF766Q5HY98 468 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 FAM205BPQ63HN1 556 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 NIPAL3Q6P499 406 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 TSPYL5Q86VY4 417 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 UXS1Q8NBZ7 420 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 RRNAD1Q96FB5 475 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 TSPAN10Q9H1Z9 355 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 ANKRD19PQ9H560 264 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 WDR54Q9H977 334 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 PLEK2Q9NYT0 353 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CLEC4AQ9UMR7 237 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 GPR52Q9Y2T5 361 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 MN1Q10571 1320 aaPredicted RBP9.03□□□□□ -0.96
LIG3-216ENST00000593099 GGT3PA6NGU5 568 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 TUBAL3A6NHL2 446 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 AGAP5A6NIR3 686 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 J3KTA2 159 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SLC16A7O60669 478 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 PYCR1P32322 319 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SOX3P41225 446 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MTNR1AP48039 350 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 CXADRP78310 365 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MXD1Q05195 221 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 IGSF11Q5DX21 431 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 BICRALQ6AI39 1079 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MBOAT2Q6ZWT7 520 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 ZNF101Q8IZC7 436 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 TMEM151AQ8N4L1 468 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SDR9C7Q8NEX9 313 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 ZNF566Q969W8 418 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 KLHL9Q9P2J3 617 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MALT1Q9UDY8 824 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 ZNF222Q9UK12 451 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 TRGV8A0A0C4DH27 118 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 A6NLC8 198 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 OIP5O43482 229 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 VAMP5O95183 116 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MT-ATP6P00846 226 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 F13BP05160 661 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 LIPCP11150 499 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 GRPRP30550 384 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SDC2P34741 201 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 KIAA0040Q15053 153 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MAMSTRQ6ZN01 415 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 MYOTQ9UBF9 498 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.03□□□□□ -0.96
LIG3-216ENST00000593099 A0A1W2PQM1 296 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 LGI1O95970 557 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 LCATP04180 440 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 PRR35P0CG20 571 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 CD36P16671 472 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 GCH1P30793 250 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 SUMO3P55854 103 aaPredicted RBP9.03□□□□□ -0.96
LIG3-216ENST00000593099 RAE1P78406 368 aaKnown RBP9.03□□□□□ -0.96
LIG3-216ENST00000593099 CARTPTQ16568 116 aa9.03□□□□□ -0.96
LIG3-216ENST00000593099 RSPO4Q2I0M5 234 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms