RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SSX2Q16385 188 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 CAMK4Q16566 473 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 PDK4Q16654 411 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 SPANXN2Q5MJ10 180 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 PIP5KL1Q5T9C9 394 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 RSBN1Q5VWQ0 802 aaPredicted RBP3.77□□□□□ -1.81
NUP88-213ENST00000576862 NKAIN2Q5VXU1 208 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 BZW1Q7L1Q6 419 aaKnown RBP3.77□□□□□ -1.81
NUP88-213ENST00000576862 ASRGL1Q7L266 308 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 FAM228AQ86W67 206 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 GPR137CQ8N3F9 429 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 ZNF461Q8TAF7 563 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 PIBF1Q8WXW3 757 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 KIFAP3Q92845 792 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 CIDECQ96AQ7 238 aaPredicted RBP3.77□□□□□ -1.81
NUP88-213ENST00000576862 DTD2Q96FN9 168 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 C12orf66Q96MD2 445 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 RPRD1AQ96P16 312 aaPredicted RBP3.77□□□□□ -1.81
NUP88-213ENST00000576862 ACCSQ96QU6 501 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 CCT8L2Q96SF2 557 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 CPXM1Q96SM3 734 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 TSG101Q99816 390 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 FAM173AQ9BQD7 235 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 DDX47Q9H0S4 455 aaKnown RBP3.77□□□□□ -1.81
NUP88-213ENST00000576862 TREM1Q9NP99 234 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 KCNMB3Q9NPA1 279 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 PIGVQ9NUD9 493 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 PRODH2Q9UF12 536 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 ANKRD31Q8N7Z5 1873 aa3.77□□□□□ -1.81
NUP88-213ENST00000576862 A0A1B0GUL6 1792 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 PHLPP2Q6ZVD8 1323 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 GOLGA6L4A6NEF3 574 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 TRABD2BA6NFA1 517 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 IQCF5A8MTL0 148 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 TCP11X1B4DZS4 312 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CYB561D2O14569 222 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 HAT1O14929 419 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CHMP2AO43633 222 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 MYO1DO94832 1006 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CDK14O94921 469 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CXCL14O95715 111 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 IL1BP01584 269 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 IGFBP1P08833 259 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 WNT2P09544 360 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 OR8G3PP0DMU2 310 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 PGAM2P15259 253 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 RPA2P15927 270 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 NCF2P19878 526 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 MARCKSP29966 332 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 SAA4P35542 130 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 SYKP43405 635 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 NDUFA8P51970 172 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 SLC25A1P53007 311 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 AIF1P55008 147 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 VBP1P61758 197 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 YWHAGP61981 247 aaKnown RBP eCLIP3.76□□□□□ -1.81
NUP88-213ENST00000576862 ZNF85Q03923 595 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CSTF1Q05048 431 aaKnown RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 ZNF33BQ06732 778 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 USF2Q15853 346 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 SNCBQ16143 134 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 GSG1Q2KHT4 349 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 ZNF829Q3KNS6 432 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 MS4A13Q5J8X5 152 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 PHYHD1Q5SRE7 291 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CARD17Q5XLA6 110 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 SULT1C3Q6IMI6 304 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 WDR88Q6ZMY6 472 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 KIAA1328Q86T90 577 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 ADAMTSL2Q86TH1 951 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 KRTAP11-1Q8IUC1 163 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CENPLQ8N0S6 344 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 ZNF525Q8N782 197 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 ZNF397Q8NF99 534 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 BPIFCQ8NFQ6 507 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 ANGPTL6Q8NI99 470 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 LKAAEAR1Q8TD35 194 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 SLC2A14Q8TDB8 520 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 SELENOMQ8WWX9 145 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 MCUR1Q96AQ8 359 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 PANX2Q96RD6 677 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 C11orf70Q9BRQ4 267 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 FAM213AQ9BRX8 229 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 FICDQ9BVA6 458 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 TRIM9Q9C026 710 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 TMEM245Q9H330 911 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 IKZF5Q9H5V7 419 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 AUNIPQ9H7T9 357 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 FN3KRPQ9HA64 309 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 ZNF275Q9NSD4 429 aaPredicted RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 DDX19AQ9NUU7 478 aaKnown RBP3.76□□□□□ -1.81
NUP88-213ENST00000576862 VNN3Q9NY84 501 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 MAST2Q6P0Q8 1798 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 CNTNAP1P78357 1384 aa3.76□□□□□ -1.81
NUP88-213ENST00000576862 A0A1B0GVL5 298 aa3.75□□□□□ -1.81
NUP88-213ENST00000576862 A0A1W2PNU3 283 aaPredicted RBP3.75□□□□□ -1.81
NUP88-213ENST00000576862 HELTA6NFD8 242 aa3.75□□□□□ -1.81
NUP88-213ENST00000576862 EFCAB7A8K855 629 aa3.75□□□□□ -1.81
NUP88-213ENST00000576862 ZNF701M0R085 212 aaPredicted RBP3.75□□□□□ -1.81
NUP88-213ENST00000576862 EEF2KO00418 725 aaKnown RBP3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms