RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 C19orf35Q6ZS72 473 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 ANKRD37Q7Z713 158 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 ISCA2Q86U28 154 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 TBC1D10CQ8IV04 446 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 KIRREL3Q8IZU9 778 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 CSGALNACT2Q8N6G5 542 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 CEP112Q8N8E3 955 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 FAM98AQ8NCA5 519 aaKnown RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 C16orf52Q8NHV5 167 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 HCAR2Q8TDS4 363 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 SCARB1Q8WTV0 552 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 ELMO1Q92556 727 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 CD101Q93033 1021 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 C7orf34Q96L11 122 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 PANX2Q96RD6 677 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 ST6GALNAC5Q9BVH7 336 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 RGCCQ9H4X1 137 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 FNDC4Q9H6D8 234 aaPredicted RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 NARFLQ9H6Q4 476 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 SUDS3Q9H7L9 328 aaPredicted RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 DUS2Q9NX74 493 aaKnown RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 PITPNC1Q9UKF7 332 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 POU2F3Q9UKI9 436 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 PRPF19Q9UMS4 504 aaKnown RBP4.95□□□□□ -1.62
VPS53-219ENST00000576019 POLDIP2Q9Y2S7 368 aa4.95□□□□□ -1.62
VPS53-219ENST00000576019 IGLV5-45A0A087WSX0 123 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 LOC100506127A0A0U1RQW1 187 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 ZNF879B4DU55 563 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 K7EQS6 105 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 CETN3O15182 167 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 STX11O75558 287 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 LRATO95237 230 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 H6PDO95479 791 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ANGPTL1O95841 491 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 TGM6O95932 706 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 IGHV4-39P01824 125 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 HSMCR30P0CW71 290 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 PRKACAP17612 351 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 SRMP19623 302 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 HOXA5P20719 270 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 AADACP22760 399 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 MMP11P24347 488 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 BDKRB1P46663 353 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 STARP49675 285 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 NDST2P52849 883 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 IL9RQ01113 521 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 SRSF9Q13242 221 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS53-219ENST00000576019 C1orf61Q13536 156 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 GK3PQ14409 553 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ATXN7L3Q14CW9 347 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 ZNF74Q16587 644 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 Q3ZCU0 254 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 RFTN2Q52LD8 501 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 SFT2D3Q587I9 215 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 LCE1DQ5T752 114 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 METTL11BQ5VVY1 283 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ACSM5Q6NUN0 579 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 FAM71F2Q6NXP2 309 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 VTCN1Q7Z7D3 282 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 NANOGP1Q8N7R0 232 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 Q8N9G6 341 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 OR5L2Q8NGL0 311 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 OR1L6Q8NGR2 347 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 OR13F1Q8NGS4 319 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 OR4C3Q8NH37 302 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 OR1L3Q8NH93 324 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 LNX1Q8TBB1 728 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 CNIH3Q8TBE1 160 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 APOBEC4Q8WW27 367 aaKnown RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 SLCO2A1Q92959 643 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ART4Q93070 314 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ZNF385AQ96PM9 386 aaKnown RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 FOXC2Q99958 501 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 DPH7Q9BTV6 452 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 TEKT3Q9BXF9 490 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 PARD6BQ9BYG5 372 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 NXF5Q9H1B4 397 aaKnown RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 AZI2Q9H6S1 392 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ZBTB20Q9HC78 741 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 ELOVL5Q9NYP7 299 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 PSMC3IPQ9P2W1 217 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 PURGQ9UJV8 347 aaKnown RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 MYO6Q9UM54 1294 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 ABCG2Q9UNQ0 655 aa4.94□□□□□ -1.62
VPS53-219ENST00000576019 NOSIPQ9Y314 301 aaKnown RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 COL27A1Q8IZC6 1860 aaPredicted RBP4.94□□□□□ -1.62
VPS53-219ENST00000576019 RYR2Q92736 4967 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 SMCO3A2RU48 225 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 LRIT2A6NDA9 550 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 OR5H15A6NDH6 313 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 G3V4G9 280 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 RANBP6O60518 1105 aaKnown RBP4.93□□□□□ -1.62
VPS53-219ENST00000576019 TOXO94900 526 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 CA1P00915 261 aaPredicted RBP4.93□□□□□ -1.62
VPS53-219ENST00000576019 GAPDHP04406 335 aaKnown RBP4.93□□□□□ -1.62
VPS53-219ENST00000576019 FGF5P12034 268 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 ACADSP16219 412 aa4.93□□□□□ -1.62
VPS53-219ENST00000576019 RPL35AP18077 110 aaKnown RBP4.93□□□□□ -1.62
VPS53-219ENST00000576019 XRCC1P18887 633 aaPredicted RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms