RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SLC35A1P78382 337 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 LSM11P83369 360 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLN3-225ENST00000566824 SLC25A35Q3KQZ1 300 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 IQCCQ4KMZ1 466 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 SWT1Q5T5J6 900 aaKnown RBP17.41■□□□□ 0.38
CLN3-225ENST00000566824 FAM214BQ7L5A3 538 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 ARHGAP24Q8N264 748 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 NSMCE2Q96MF7 247 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 BTBD10Q9BSF8 475 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 KCNJ16Q9NPI9 418 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 SELENONQ9NZV5 590 aa17.41■□□□□ 0.38
CLN3-225ENST00000566824 SETXQ7Z333 2677 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 ADGRG4Q8IZF6 3080 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 EEF1E1-BLOC1S5C9J1V9 151 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 EEF1E1O43324 174 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 GMNNO75496 209 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 PRSS23O95084 383 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 OR5F1O95221 314 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 AHSA1O95433 338 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 PLGP00747 810 aaPredicted RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 BGLAPP02818 100 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 IFNW1P05000 195 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 GPIP06744 558 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 NTF4P34130 210 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 VLDLRP98155 873 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 RASGEF1BQ0VAM2 473 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 SNTB1Q13884 538 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 TRIM25Q14258 630 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 PGM2L1Q6PCE3 622 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 LUZP2Q86TE4 346 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 MCEMP1Q8IX19 187 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 MFSD8Q8NHS3 518 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 TMEM255BQ8WV15 326 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 CCDC124Q96CT7 223 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 MOGAT1Q96PD6 335 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 TMEM43Q9BTV4 400 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 ZNF426Q9BUY5 554 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 CADM1Q9BY67 442 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 MEPEQ9NQ76 525 aaPredicted RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 MAN2C1Q9NTJ4 1040 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 ACTR3BQ9P1U1 418 aa17.4■□□□□ 0.38
CLN3-225ENST00000566824 SAMD4AQ9UPU9 718 aaKnown RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 KLF2Q9Y5W3 355 aaPredicted RBP17.4■□□□□ 0.38
CLN3-225ENST00000566824 TRAV36DV7A0A075B6V5 113 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 TCRBV5S2A0A599 114 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 hCG_2039718K7EN88 272 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 KPNA4O00629 521 aaPredicted RBP17.39■□□□□ 0.37
CLN3-225ENST00000566824 DNPH1O43598 174 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 SMNDC1O75940 238 aaKnown RBP eCLIP17.39■□□□□ 0.37
CLN3-225ENST00000566824 DIRAS1O95057 198 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 UGT2B15P54855 530 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 RNPS1Q15287 305 aaKnown RBP17.39■□□□□ 0.37
CLN3-225ENST00000566824 OTUD3Q5T2D3 398 aaPredicted RBP17.39■□□□□ 0.37
CLN3-225ENST00000566824 ZNF474Q6S9Z5 364 aaPredicted RBP17.39■□□□□ 0.37
CLN3-225ENST00000566824 ZNF610Q8N9Z0 462 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 PYURFQ96I23 114 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 PRRC1Q96M27 445 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 C12orf49Q9H741 205 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 NDUFAF4Q9P032 175 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 PKDREJQ9NTG1 2253 aa17.39■□□□□ 0.37
CLN3-225ENST00000566824 ACOT8O14734 319 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 GSC2O15499 205 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 PIP5K1CO60331 668 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 FZD7O75084 574 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 YES1P07947 543 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 GRPRP30550 384 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 ASCL1P50553 236 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 CTBP2P56545 445 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 PAQR6Q6TCH4 344 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 SLC43A2Q8N370 569 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 KDM8Q8N371 416 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 PFN4Q8NHR9 129 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 ZHX1-C8orf76Q96EF9 292 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 TAPBPLQ9BX59 468 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 BCO1Q9HAY6 547 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 GLRX2Q9NS18 164 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 EMC9Q9Y3B6 208 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 ENPP4Q9Y6X5 453 aa17.38■□□□□ 0.37
CLN3-225ENST00000566824 CRYBG3Q68DQ2 2970 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 IGKV3D-15A0A087WSY6 115 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 AQP7P3A6NL99 342 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 A8MXE2 369 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 M0R082 166 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 EIF1BO60739 113 aaKnown RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 DNAJC8O75937 253 aaPredicted RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 SLC17A1Q14916 467 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 DNAL1Q4LDG9 190 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 FAM69AQ5T7M9 428 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 SP5Q6BEB4 398 aaPredicted RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 GTF2IRD2BQ6EKJ0 949 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 LCN8Q6JVE9 175 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 TTC33Q6PID6 262 aaPredicted RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 GTF2IRD2Q86UP8 949 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 DHFR2Q86XF0 187 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 MEX3DQ86XN8 651 aaKnown RBP17.37■□□□□ 0.37
CLN3-225ENST00000566824 LRRC17Q8N6Y2 441 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 OR6K3Q8NGY3 331 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 ZNF417Q8TAU3 575 aa17.37■□□□□ 0.37
CLN3-225ENST00000566824 MPP4Q96JB8 637 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms