RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PFN4Q8NHR9 129 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 ADAMTS16Q8TE57 1224 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 SLC25A43Q8WUT9 341 aaPredicted RBP8.18□□□□□ -1.1
VPS35-206ENST00000565228 GMPPAQ96IJ6 420 aaPredicted RBP8.18□□□□□ -1.1
VPS35-206ENST00000565228 TPD52L3Q96J77 140 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 HSH2DQ96JZ2 352 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 C7orf34Q96L11 122 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 KCTD14Q9BQ13 255 aaPredicted RBP8.18□□□□□ -1.1
VPS35-206ENST00000565228 SPATA5L1Q9BVQ7 753 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 POTEKPQ9BYX7 375 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 C12orf49Q9H741 205 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 HHATLQ9HCP6 504 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 SPAG4Q9NPE6 437 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 PLSCR4Q9NRQ2 329 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 SERINC1Q9NRX5 453 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 TAS2R1Q9NYW7 299 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 ADA2Q9NZK5 511 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 RHCGQ9UBD6 479 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 HDGFL3Q9Y3E1 203 aa8.18□□□□□ -1.1
VPS35-206ENST00000565228 ROS1P08922 2347 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 SPG11Q96JI7 2443 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 IGKV3D-15A0A087WSY6 115 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 TCRBV5S2A0A599 114 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 A8MVM7 634 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 NDUFAB1O14561 156 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 DVL2O14641 736 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 FMO6PO60774 539 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 SMNDC1O75940 238 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS35-206ENST00000565228 PDE5AO76074 875 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 DIRAS1O95057 198 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 SYNGR4O95473 234 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 CRHP06850 196 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 THBDP07204 575 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 CD8BP10966 210 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 PNMTP11086 282 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 CXCR1P25024 350 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 LOXP28300 417 aaPredicted RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 SLC16A1P53985 500 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 VLDLRP98155 873 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 RASGEF1BQ0VAM2 473 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 FOXD4Q12950 439 aaPredicted RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 FHL1Q13642 323 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 SLC17A1Q14916 467 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 ZSWIM7Q19AV6 140 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 INTS11Q5TA45 600 aaKnown RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 GLYATQ6IB77 296 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 SEZ6L2Q6UXD5 910 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 MEX3BQ6ZN04 569 aaKnown RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 DEF8Q6ZN54 512 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 LINGO2Q7L985 606 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 CHMP1BQ7LBR1 199 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 TRPM8Q7Z2W7 1104 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 STK35Q8TDR2 534 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 TMEM255BQ8WV15 326 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 RNASE6Q93091 150 aaKnown RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 DTNBP1Q96EV8 351 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 ZFP3Q96NJ6 502 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 ZNF559Q9BR84 538 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 RBM24Q9BX46 236 aaKnown RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 TRIM2Q9C040 744 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 C12orf10Q9HB07 376 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 C20orf141Q9NUB4 165 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 DCAF13Q9NV06 445 aaKnown RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 CRIM1Q9NZV1 1036 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 MCTS1Q9ULC4 181 aaKnown RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 SLC7A7Q9UM01 511 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 TRAPPC4Q9Y296 219 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 FLVCR1Q9Y5Y0 555 aa8.17□□□□□ -1.1
VPS35-206ENST00000565228 SETD2Q9BYW2 2564 aaPredicted RBP8.17□□□□□ -1.1
VPS35-206ENST00000565228 VPS13CQ709C8 3753 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 AQP7P3A6NL99 342 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 GJE1A6NN92 205 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 M0R082 166 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 MSTNO14793 375 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ARPC2O15144 300 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 CHP2O43745 196 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 PRKD3O94806 890 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 IGHV3-9P01782 118 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 GRPRP30550 384 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 UQCRC1P31930 480 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 IDUAP35475 653 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 CLK1P49759 484 aaKnown RBP8.16□□□□□ -1.1
VPS35-206ENST00000565228 COPZ1P61923 177 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 SF3B4Q15427 424 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS35-206ENST00000565228 PHYHD1Q5SRE7 291 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ANKRD34AQ69YU3 496 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 OR2A2Q6IF42 318 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ZNF613Q6PF04 617 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ULK3Q6PHR2 472 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 TBPL2Q6SJ96 375 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 STAC2Q6ZMT1 411 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 GABRG1Q8N1C3 465 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 OR6K3Q8NGY3 331 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 MFSD8Q8NHS3 518 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ZNF417Q8TAU3 575 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 NRGNQ92686 78 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 SLC25A36Q96CQ1 311 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 DDIT4LQ96D03 193 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 SLC41A3Q96GZ6 507 aa8.16□□□□□ -1.1
VPS35-206ENST00000565228 ZNF469Q96JG9 3925 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms