RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 AKR7A3O95154 331 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 C6orf47O95873 294 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 IGKV3-15P01624 115 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 IGLV1-44P01699 117 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 NUDT17P0C025 328 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 UROSP10746 265 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 LAMP1P11279 417 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 IMPDH2P12268 514 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 CBR1P16152 277 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 PRPH2P23942 346 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 SOAT1P35610 550 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 HTR3AP46098 478 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 CAPZA2P47755 286 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 IDH2P48735 452 aaKnown RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 RPS26P62854 115 aaKnown RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 ZP4Q12836 540 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 LSM12Q3MHD2 195 aaKnown RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 GALNTL6Q49A17 601 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 RFTN2Q52LD8 501 aaPredicted RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 DCAF12L2Q5VW00 463 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 CLEC6AQ6EIG7 209 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM225Q6GV28 225 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 PAQR6Q6TCH4 344 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 C16orf62Q7Z3J2 963 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 LSRQ86X29 649 aaPredicted RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 GSPT2Q8IYD1 628 aaKnown RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 RIBC1Q8N443 379 aaPredicted RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 ARFGAP2Q8N6H7 521 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 FAM169BQ8N8A8 192 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 OR5AK3PQ8NH89 298 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 OR5P2Q8WZ92 322 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 MOAP1Q96BY2 351 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 CCDC126Q96EE4 140 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF317Q96PQ6 595 aaPredicted RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 DUX5Q96PT3 197 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 SF3B5Q9BWJ5 86 aaKnown RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 C1QTNF5Q9BXJ0 243 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 TMPRSS13Q9BYE2 586 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 MRPL37Q9BZE1 423 aaKnown RBP6.3□□□□□ -1.4
VPS4A-203ENST00000564399 SERHL2Q9H4I8 314 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 G6PC2Q9NQR9 355 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 OXSMQ9NWU1 459 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 ARMCX1Q9P291 453 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF180Q9UJW8 692 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 SLC35A3Q9Y2D2 325 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 FIS1Q9Y3D6 152 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 NOX1Q9Y5S8 564 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 NBEAL2Q6ZNJ1 2754 aa6.3□□□□□ -1.4
VPS4A-203ENST00000564399 DOCK11Q5JSL3 2073 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM72A0PK05 275 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 POM121CA8CG34 1229 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 J3QLI3 93 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SCAMP2O15127 329 aaKnown RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF208O43345 1280 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 BCAS1O75363 584 aaPredicted RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 UPK3AO75631 287 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 AK1P00568 194 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 GSNP06396 782 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 GPIP06744 558 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 LINC00032P0C843 101 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 MYL2P10916 166 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 NEFHP12036 1026 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 BCKDHAP12694 445 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 MATN1P21941 496 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 NR4A1P22736 598 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 PRTN3P24158 256 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 TACR3P29371 465 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ARR3P36575 388 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 PGM1P36871 562 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 RPL3P39023 403 aaKnown RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ALDH3B1P43353 468 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SELENOPP49908 381 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 POLR2HP52434 150 aaKnown RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SEC24CP53992 1094 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SH3BGRP55822 239 aaPredicted RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 NAA20P61599 178 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 IL13RA1P78552 427 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ARF1P84077 181 aaKnown RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SLC7A5Q01650 507 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ROR2Q01974 943 aaKnown RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 POU3F1Q03052 451 aaPredicted RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 MVKQ03426 396 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 CEACAM7Q14002 265 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 OR7A5Q15622 319 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 MAPK14Q16539 360 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 FAM153CQ494X1 144 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 ATP6AP1LQ52LC2 224 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 AVPI1Q5T686 147 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 LIPMQ5VYY2 423 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 NIPAL3Q6P499 406 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 EMBQ6PCB8 327 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 FRMD7Q6ZUT3 714 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 HMGN2P46Q86SG4 172 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 MYPOPQ86VE0 399 aaPredicted RBP6.29□□□□□ -1.4
VPS4A-203ENST00000564399 LCA5Q86VQ0 697 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 TREML1Q86YW5 311 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 SIGLECL1Q8N7X8 197 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 IL17RDQ8NFM7 739 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 OR2T11Q8NH01 316 aa6.29□□□□□ -1.4
VPS4A-203ENST00000564399 RNF217Q8TC41 542 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms