RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 VAPAQ9P0L0 249 aa14.85□□□□□ -0.03
CLK3-210ENST00000563112 GMEB1Q9Y692 573 aa14.85□□□□□ -0.03
CLK3-210ENST00000563112 ELOA3DA6NLF2 546 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 FRS3O43559 492 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 H2AFXP16104 143 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 GPX2P18283 190 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 SLC6A2P23975 617 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 ATP5J2P56134 94 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 SCARB2Q14108 478 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 ELOA3BQ3SY89 546 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 ZNF672Q499Z4 452 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 SEZ6L2Q6UXD5 910 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 AAED1Q7RTV5 226 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 ATG4DQ86TL0 474 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 GPAT4Q86UL3 456 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 ELOA3Q8NG57 546 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 OR52E4Q8NGH9 312 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 OR52N5Q8NH56 324 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 LILRB1Q8NHL6 650 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 SMAP2Q8WU79 429 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 TMEM45BQ96B21 275 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 THOC1Q96FV9 657 aaKnown RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 TRMT61AQ96FX7 289 aaKnown RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 RADILQ96JH8 1075 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 MUS81Q96NY9 551 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 SIKE1Q9BRV8 207 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 ZNF701Q9NV72 531 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 LEF1Q9UJU2 399 aaPredicted RBP14.84□□□□□ -0.03
CLK3-210ENST00000563112 DCTN4Q9UJW0 460 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 SLC13A4Q9UKG4 626 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 MGAT4BQ9UQ53 548 aa14.84□□□□□ -0.03
CLK3-210ENST00000563112 TRBV5-3A0A0A0MS03 114 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 PRORSD1PA6NEY8 169 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 ANGPT2O15123 496 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 SERPINB7O75635 380 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 KRT33AO76009 404 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 GTF2E2P29084 291 aaKnown RBP14.83□□□□□ -0.04
CLK3-210ENST00000563112 HOXC5Q00444 222 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 GABRA6Q16445 453 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 DHRS4L2Q6PKH6 230 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 TMEM108Q6UXF1 575 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 ABHD12BQ7Z5M8 362 aaPredicted RBP14.83□□□□□ -0.04
CLK3-210ENST00000563112 POMGNT2Q8NAT1 580 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 BHLHE22Q8NFJ8 381 aaPredicted RBP14.83□□□□□ -0.04
CLK3-210ENST00000563112 KBTBD8Q8NFY9 601 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 MFSD8Q8NHS3 518 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 NEUROG1Q92886 237 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 GTPBP3Q969Y2 492 aaKnown RBP14.83□□□□□ -0.04
CLK3-210ENST00000563112 SLC25A36Q96CQ1 311 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 TRIM2Q9C040 744 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 TMEM38AQ9H6F2 299 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 C12orf10Q9HB07 376 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 SLC7A10Q9NS82 523 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 FAIMQ9NVQ4 179 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 CISD1Q9NZ45 108 aaKnown RBP14.83□□□□□ -0.04
CLK3-210ENST00000563112 RASD1Q9Y272 281 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 NDUFAF1Q9Y375 327 aa14.83□□□□□ -0.04
CLK3-210ENST00000563112 TMEM229AB2RXF0 380 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 ABCD4O14678 606 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 EDF1O60869 148 aaKnown RBP14.82□□□□□ -0.04
CLK3-210ENST00000563112 NPIPB7O75200 414 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 ITGA5P08648 1049 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 PTAFRP25105 342 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 ZNF83P51522 516 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 NCALDP61601 193 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 C1QTNF12Q5T7M4 302 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 TSPO2Q5TGU0 170 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 C9orf135Q5VTT2 229 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 C5orf46Q6UWT4 87 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 CLEC9AQ6UXN8 241 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 DHDDSQ86SQ9 333 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 DEPDC4Q8N2C3 294 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 C17orf78Q8N4C9 275 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 HIPK4Q8NE63 616 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 C1orf162Q8NEQ5 155 aaPredicted RBP14.82□□□□□ -0.04
CLK3-210ENST00000563112 DNAJA4Q8WW22 397 aaPredicted RBP14.82□□□□□ -0.04
CLK3-210ENST00000563112 SLCO5A1Q9H2Y9 848 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 ALG2Q9H553 416 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 NPHS2Q9NP85 383 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 NPAP1Q9NZP6 1156 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 SELENONQ9NZV5 590 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 ANGPT4Q9Y264 503 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 SLC25A15Q9Y619 301 aa14.82□□□□□ -0.04
CLK3-210ENST00000563112 NAV3Q8IVL0 2385 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 A0A0G2JND7 137 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 OR6C65A6NJZ3 312 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 H7C1Q1 480 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 PDLIM1O00151 329 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 OR2T1O43869 369 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 DANCRP0C864 163 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 PNMTP11086 282 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 MPGP29372 298 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 CDH11P55287 796 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 RUNDC3AQ59EK9 446 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 KLHL24Q6TFL4 600 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 DLEU7Q6UYE1 221 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 ARMC8Q8IUR7 673 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 PIAS4Q8N2W9 510 aaPredicted RBP14.81□□□□□ -0.04
CLK3-210ENST00000563112 C10orf111Q8N326 155 aa14.81□□□□□ -0.04
CLK3-210ENST00000563112 DPP10Q8N608 796 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms