RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 KCNK17Q96T54 332 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 CACNG6Q9BXT2 260 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 MANSC1Q9H8J5 431 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 MTHFD2LQ9H903 347 aaPredicted RBP16.65■□□□□ 0.26
VPS35-202ENST00000561713 TPT1P8Q9HAU6 139 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 ADPRHL2Q9NX46 363 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 UPB1Q9UBR1 384 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 TRAPPC4Q9Y296 219 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 CHST2Q9Y4C5 530 aa16.65■□□□□ 0.26
VPS35-202ENST00000561713 LIPT2A6NK58 231 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 PDLIM1O00151 329 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 FAAHO00519 579 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 IL6P05231 212 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 CDH2P19022 906 aaPredicted RBP16.64■□□□□ 0.25
VPS35-202ENST00000561713 CD40P25942 277 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 ACAA2P42765 397 aaKnown RBP16.64■□□□□ 0.25
VPS35-202ENST00000561713 HOXC5Q00444 222 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 SLC17A1Q14916 467 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 AGAP6Q5VW22 663 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 SLC2A7Q6PXP3 512 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 PAQR6Q6TCH4 344 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 TMEM108Q6UXF1 575 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 SERPINA11Q86U17 422 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 GPAT4Q86UL3 456 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 P2RY8Q86VZ1 359 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 WDR31Q8NA23 367 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 OR9K2Q8NGE7 335 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 MAL2Q969L2 176 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 TLCD1Q96CP7 247 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 NAA11Q9BSU3 229 aaPredicted RBP16.64■□□□□ 0.25
VPS35-202ENST00000561713 BEX2Q9BXY8 128 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 SDR39U1Q9NRG7 319 aaPredicted RBP16.64■□□□□ 0.25
VPS35-202ENST00000561713 ZIM2Q9NZV7 527 aa16.64■□□□□ 0.25
VPS35-202ENST00000561713 UBDO15205 165 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 TFPTP0C1Z6 253 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 CXCR1P25024 350 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 POLR2JP52435 117 aaKnown RBP16.63■□□□□ 0.25
VPS35-202ENST00000561713 CRISP3P54108 245 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 TXNL4AP83876 142 aaKnown RBP16.63■□□□□ 0.25
VPS35-202ENST00000561713 LRRC74AQ0VAA2 488 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 C11orf71Q6IPW1 123 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 CLEC2AQ6UVW9 174 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 ITCHQ96J02 903 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 ADAD1Q96M93 576 aaKnown RBP16.63■□□□□ 0.25
VPS35-202ENST00000561713 ALKBH3Q96Q83 286 aaPredicted RBP16.63■□□□□ 0.25
VPS35-202ENST00000561713 ADAM19Q9H013 955 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 TMBIM4Q9HC24 238 aa16.63■□□□□ 0.25
VPS35-202ENST00000561713 ATP6V1G2-DDX39BF2Z307 99 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 EIF1BO60739 113 aaKnown RBP16.62■□□□□ 0.25
VPS35-202ENST00000561713 NCF2P19878 526 aaPredicted RBP16.62■□□□□ 0.25
VPS35-202ENST00000561713 FKBP2P26885 142 aaKnown RBP16.62■□□□□ 0.25
VPS35-202ENST00000561713 VLDLRP98155 873 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 LOXL1Q08397 574 aaPredicted RBP16.62■□□□□ 0.25
VPS35-202ENST00000561713 HIKESHIQ53FT3 197 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 RNF220Q5VTB9 566 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 KLHL17Q6TDP4 642 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 ZNF440Q8IYI8 595 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 ZNF525Q8N782 197 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 ZIC4Q8N9L1 334 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 PMM1Q92871 262 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 AMBRA1Q9C0C7 1298 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 RMND5AQ9H871 391 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 SLC17A5Q9NRA2 495 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 USH1CQ9Y6N9 552 aa16.62■□□□□ 0.25
VPS35-202ENST00000561713 AQP7P3A6NL99 342 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 ELOA3DA6NLF2 546 aaPredicted RBP16.61■□□□□ 0.25
VPS35-202ENST00000561713 SLCO1B7G3V0H7 640 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 GPIP06744 558 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 PTAFRP25105 342 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 TTKP33981 857 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 DSCR9P59020 149 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 SRSF2Q01130 221 aaKnown RBP16.61■□□□□ 0.25
VPS35-202ENST00000561713 GSTA3Q16772 222 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 ELOA3BQ3SY89 546 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 WBP2NLQ6ICG8 309 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 AAED1Q7RTV5 226 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 MIER2Q8N344 545 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 ELOA3Q8NG57 546 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 TMEM45BQ96B21 275 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 C3orf49Q96BT1 292 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 MUS81Q96NY9 551 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 DHRS9Q9BPW9 319 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 PAIP1Q9H074 479 aaKnown RBP16.61■□□□□ 0.25
VPS35-202ENST00000561713 CBLN4Q9NTU7 201 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 TMEM160Q9NX00 188 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 CALML5Q9NZT1 146 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 SEC14L4Q9UDX3 406 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 DCTN4Q9UJW0 460 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 ATP23Q9Y6H3 246 aa16.61■□□□□ 0.25
VPS35-202ENST00000561713 MALRD1Q5VYJ5 2156 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 TMEM229AB2RXF0 380 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 KLF11O14901 512 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 LGI1O95970 557 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 ZCCHC18P0CG32 403 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 HOXB9P17482 250 aaPredicted RBP16.6■□□□□ 0.25
VPS35-202ENST00000561713 SELENOPP49908 381 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 FABP6P51161 128 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 P2RY4P51582 365 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 COPZ1P61923 177 aa16.6■□□□□ 0.25
VPS35-202ENST00000561713 TUBA1BP68363 451 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms