RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 LRIF1Q5T3J3 769 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 PRAMEF8Q5VWM4 474 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 PRAMEF7Q5VXH5 474 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 CASP12Q6UXS9 341 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 SSX8Q7RTT4 187 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 GOLGA6L1Q8N7Z2 621 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 ZIC4Q8N9L1 334 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 OR9K2Q8NGE7 335 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 C3orf49Q96BT1 292 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 SPDL1Q96EA4 605 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 CCDC28BQ9BUN5 200 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 RSPO3Q9BXY4 272 aaPredicted RBP9.05□□□□□ -0.96
CLK3-205ENST00000561673 RAD21L1Q9H4I0 556 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 ARMC7Q9H6L4 198 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 SLC7A10Q9NS82 523 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 TAS2R16Q9NYV7 291 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 CISD1Q9NZ45 108 aaKnown RBP9.05□□□□□ -0.96
CLK3-205ENST00000561673 CCDC167Q9P0B6 97 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 SLC9A8Q9Y2E8 581 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 SLC25A15Q9Y619 301 aa9.05□□□□□ -0.96
CLK3-205ENST00000561673 NSD1Q96L73 2696 aaPredicted RBP9.04□□□□□ -0.96
CLK3-205ENST00000561673 A0A1W2PP18 115 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 AQP7P3A6NL99 342 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 NR5A2O00482 541 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 FRS3O43559 492 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 CDKN1AP38936 164 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 ZNF83P51522 516 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 P2RY4P51582 365 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 TNK1Q13470 666 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 TSPO2Q5TGU0 170 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 C9orf135Q5VTT2 229 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 C1orf140Q5VVS0 124 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 OR7E24Q6IFN5 339 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 GPAT4Q86UL3 456 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 C10orf111Q8N326 155 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 WDR31Q8NA23 367 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 BBS10Q8TAM1 723 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 TMEM45BQ96B21 275 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 TRMT61AQ96FX7 289 aaKnown RBP9.04□□□□□ -0.96
CLK3-205ENST00000561673 ZNF385AQ96PM9 386 aaKnown RBP9.04□□□□□ -0.96
CLK3-205ENST00000561673 SF3B5Q9BWJ5 86 aaKnown RBP9.04□□□□□ -0.96
CLK3-205ENST00000561673 C1QTNF6Q9BXI9 259 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 CACYBPQ9HB71 228 aaKnown RBP9.04□□□□□ -0.96
CLK3-205ENST00000561673 ADPRHL2Q9NX46 363 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 VAPAQ9P0L0 249 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 UPB1Q9UBR1 384 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 DCTN4Q9UJW0 460 aa9.04□□□□□ -0.96
CLK3-205ENST00000561673 DNHD1Q96M86 4753 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 TMEM229AB2RXF0 380 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 C5orf58C9J3I9 102 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 NPIPB7O75200 414 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 ETS2P15036 469 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 PTAFRP25105 342 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 CD40P25942 277 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 MPGP29372 298 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 CDH11P55287 796 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 EGR4Q05215 589 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 SPOCK1Q08629 439 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 CLEC12BQ2HXU8 276 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 AGKQ53H12 422 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 TMEM225Q6GV28 225 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 KLHL17Q6TDP4 642 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 TMEM108Q6UXF1 575 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 AAED1Q7RTV5 226 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 COMTD1Q86VU5 262 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 NFKBIDQ8NI38 313 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 STK35Q8TDR2 534 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 DYDC1Q8WWB3 177 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 SLC35B4Q969S0 331 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 GTPBP3Q969Y2 492 aaKnown RBP9.03□□□□□ -0.96
CLK3-205ENST00000561673 RADILQ96JH8 1075 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 TRAF4Q9BUZ4 470 aaPredicted RBP9.03□□□□□ -0.96
CLK3-205ENST00000561673 TAPBPLQ9BX59 468 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 AMBRA1Q9C0C7 1298 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 PIF1Q9H611 641 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 MGAT4BQ9UQ53 548 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 GMEB1Q9Y692 573 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 USF3Q68DE3 2245 aa9.03□□□□□ -0.96
CLK3-205ENST00000561673 TRBV5-3A0A0A0MS03 114 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 FTCDNL1E5RQL4 147 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 E7EQL1 145 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 M0R1B8 84 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 TPST1O60507 370 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 NDUFS7O75251 213 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 ARAFP10398 606 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 PTNP21246 168 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 PPIBP23284 216 aaKnown RBP9.02□□□□□ -0.97
CLK3-205ENST00000561673 PRKAR1BP31321 381 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 RPS5P46782 204 aaKnown RBP9.02□□□□□ -0.97
CLK3-205ENST00000561673 ATP4BP51164 291 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 SLC25A3Q00325 362 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 CDK6Q00534 326 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 TGFBR3Q03167 851 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 LGALS3BPQ08380 585 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 SQLEQ14534 574 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 ADRM1Q16186 407 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 GLIPR1L2Q4G1C9 344 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 GCNT6Q5T4J0 391 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 REEP3Q6NUK4 255 aa9.02□□□□□ -0.97
CLK3-205ENST00000561673 SLC22A25Q6T423 547 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms