RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ADIPOQQ15848 244 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 SYPL1Q16563 259 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 TBRG1Q3YBR2 411 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 HIKESHIQ53FT3 197 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 OTUD3Q5T2D3 398 aaPredicted RBP14.29□□□□□ -0.12
CLN3-208ENST00000561505 ANKRD16Q6P6B7 361 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 AAED1Q7RTV5 226 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 ABHD12BQ7Z5M8 362 aaPredicted RBP14.29□□□□□ -0.12
CLN3-208ENST00000561505 ANKRD46Q86W74 232 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 ANKFN1Q8N957 763 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 ZNF540Q8NDQ6 660 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 ANKK1Q8NFD2 765 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 OR1K1Q8NGR3 316 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 SLC38A2Q96QD8 506 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 LINC00470Q9BZP3 86 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 NELFAQ9H3P2 528 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 MOV10Q9HCE1 1003 aaKnown RBP14.29□□□□□ -0.12
CLN3-208ENST00000561505 TMEM45AQ9NWC5 275 aa14.29□□□□□ -0.12
CLN3-208ENST00000561505 CFAP73A6NFT4 308 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 OR6C65A6NJZ3 312 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 RPL36A-HNRNPH2H7BZ11 118 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 SNUPNO95149 360 aaKnown RBP14.28□□□□□ -0.12
CLN3-208ENST00000561505 CPSF4O95639 269 aaKnown RBP14.28□□□□□ -0.12
CLN3-208ENST00000561505 IGKV3-15P01624 115 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 APEHP13798 732 aaKnown RBP14.28□□□□□ -0.12
CLN3-208ENST00000561505 CCNA2P20248 432 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 SNRPD2P62316 118 aaKnown RBP14.28□□□□□ -0.12
CLN3-208ENST00000561505 NAAAQ02083 359 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 GGTLC2Q14390 218 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 SQLEQ14534 574 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 GPAT3Q53EU6 434 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 SPANXN4Q5MJ08 99 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 OGFOD2Q6N063 350 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 CREB3L2Q70SY1 520 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 LINGO2Q7L985 606 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 ZNF440Q8IYI8 595 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 ZNF781Q8N8C0 355 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 NUP37Q8NFH4 326 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 AURKBQ96GD4 344 aaPredicted RBP14.28□□□□□ -0.12
CLN3-208ENST00000561505 SLC35A5Q9BS91 424 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 SOX7Q9BT81 388 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 TMEM109Q9BVC6 243 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 C20orf27Q9GZN8 174 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 DSPPQ9NZW4 1301 aa14.28□□□□□ -0.12
CLN3-208ENST00000561505 CDHR4A6H8M9 788 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 AKR7A3O95154 331 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 STAMBPO95630 424 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 DBIP07108 87 aaKnown RBP14.27□□□□□ -0.13
CLN3-208ENST00000561505 IGFBP1P08833 259 aaPredicted RBP14.27□□□□□ -0.13
CLN3-208ENST00000561505 IDH3GP51553 393 aaPredicted RBP14.27□□□□□ -0.13
CLN3-208ENST00000561505 MVDP53602 400 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 CLNS1AP54105 237 aaKnown RBP14.27□□□□□ -0.13
CLN3-208ENST00000561505 CEACAM7Q14002 265 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 MRPL2Q5T653 305 aaKnown RBP14.27□□□□□ -0.13
CLN3-208ENST00000561505 HMGN2P46Q86SG4 172 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 LSRQ86X29 649 aaPredicted RBP14.27□□□□□ -0.13
CLN3-208ENST00000561505 RNF130Q86XS8 419 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 EPHX4Q8IUS5 362 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 OR4F15Q8NGB8 312 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 WDR60Q8WVS4 1066 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 HPS1Q92902 700 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 TEX37Q96LM6 180 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 SORT1Q99523 831 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 DOK1Q99704 481 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 ZNF442Q9H7R0 627 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 RAP2CQ9Y3L5 183 aa14.27□□□□□ -0.13
CLN3-208ENST00000561505 TMEM129A0AVI4 362 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 A8MVM7 634 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 TMEM229AB2RXF0 380 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 E9PBE3 544 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 KLF11O14901 512 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 BIRC5O15392 142 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 LILRA1O75019 489 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 ZNF432O94892 652 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 TGFAP01135 160 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 CRYAAP02489 173 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 SERPINE1P05121 402 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 MYZAPP0CAP1 466 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 UQCRBP14927 111 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 HNF1AP20823 631 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 HPCAP84074 193 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 POU3F1Q03052 451 aaPredicted RBP14.26□□□□□ -0.13
CLN3-208ENST00000561505 HGFACQ04756 655 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 LRRC74AQ0VAA2 488 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 GNA13Q14344 377 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 FAM174BQ3ZCQ3 159 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 KLHL24Q6TFL4 600 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 IL17RELQ6ZVW7 336 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 NUDCD3Q8IVD9 361 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 RFLNBQ8N5W9 214 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 ANKS4BQ8N8V4 417 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 BPESC1Q9GZL8 116 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 CHST2Q9Y4C5 530 aa14.26□□□□□ -0.13
CLN3-208ENST00000561505 CCDC154A6NI56 674 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 FTCDNL1E5RQL4 147 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 FRS3O43559 492 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 LGI1O95970 557 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 TFPTP0C1Z6 253 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 OR4A8P0C604 315 aa14.25□□□□□ -0.13
CLN3-208ENST00000561505 CECR9P0C854 216 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms