RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 ADAM19Q9H013 955 aa14.1□□□□□ -0.15
LMX1B-204ENST00000561065 NSRP1Q9H0G5 558 aaKnown RBP14.1□□□□□ -0.15
LMX1B-204ENST00000561065 ZNF385DQ9H6B1 395 aa14.1□□□□□ -0.15
LMX1B-204ENST00000561065 NGBQ9NPG2 151 aa14.1□□□□□ -0.15
LMX1B-204ENST00000561065 NPAP1Q9NZP6 1156 aa14.1□□□□□ -0.15
LMX1B-204ENST00000561065 FN1P02751 2386 aaKnown RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 TRBV5-3A0A0A0MS03 114 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 A8MVM7 634 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 CNOT4O95628 575 aaKnown RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 GPIP06744 558 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 INHBBP09529 407 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 PRG2P13727 222 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 ACAA2P42765 397 aaKnown RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 SLC16A1P53985 500 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 FOXG1P55316 489 aaPredicted RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 H3F3AP84243 136 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 BSPH1Q075Z2 132 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 Q71RC1 249 aaPredicted RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 YTHDF3Q7Z739 585 aaKnown RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 PATL1Q86TB9 770 aaKnown RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 MSRB3Q8IXL7 192 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 C10orf111Q8N326 155 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 ZNF611Q8N823 705 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 SLC26A7Q8TE54 656 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 DNAJA4Q8WW22 397 aaPredicted RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 RSPO3Q9BXY4 272 aaPredicted RBP14.09□□□□□ -0.15
LMX1B-204ENST00000561065 C12orf10Q9HB07 376 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 TMEM27Q9HBJ8 222 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 RNF115Q9Y4L5 304 aa14.09□□□□□ -0.15
LMX1B-204ENST00000561065 PLCE1Q9P212 2302 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 DPRXA6NFQ7 191 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 TRIM64A6NGJ6 449 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 TRIM64BA6NI03 449 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 CLOCKO15516 846 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 IFNA14P01570 189 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 PNMTP11086 282 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 IDUAP35475 653 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 STK11Q15831 433 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 TRMT5Q32P41 509 aaKnown RBP14.08□□□□□ -0.16
LMX1B-204ENST00000561065 ADAM5Q6NVV9 412 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 DHRS4L2Q6PKH6 230 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 SERPINA11Q86U17 422 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 BIVMQ86UB2 503 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 ZNF100Q8IYN0 542 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 CLIP4Q8N3C7 705 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 ZNF433Q8N7K0 673 aaPredicted RBP14.08□□□□□ -0.16
LMX1B-204ENST00000561065 HSD17B8Q92506 261 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 PIF1Q9H611 641 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 SAR1AQ9NR31 198 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 ZNF701Q9NV72 531 aaPredicted RBP14.08□□□□□ -0.16
LMX1B-204ENST00000561065 NOSIPQ9Y314 301 aaKnown RBP14.08□□□□□ -0.16
LMX1B-204ENST00000561065 CAPN7Q9Y6W3 813 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 TLN2Q9Y4G6 2542 aa14.08□□□□□ -0.16
LMX1B-204ENST00000561065 ELOA3DA6NLF2 546 aaPredicted RBP14.07□□□□□ -0.16
LMX1B-204ENST00000561065 H7C1Q1 480 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 NDUFAB1O14561 156 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 ARHGEF9O43307 516 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 OR2T1O43869 369 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 VAMP5O95183 116 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 C8BP07358 591 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 SOD3P08294 240 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 PAX1P15863 534 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 KLF10Q13118 480 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 CAPRIN1Q14444 709 aaKnown RBP14.07□□□□□ -0.16
LMX1B-204ENST00000561065 ELOA3BQ3SY89 546 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 PRSS57Q6UWY2 283 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 RANBP3LQ86VV4 465 aaPredicted RBP14.07□□□□□ -0.16
LMX1B-204ENST00000561065 LSMEM1Q8N8F7 131 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 ELOA3Q8NG57 546 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 OR8J3Q8NGG0 315 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 OR52E4Q8NGH9 312 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 STK35Q8TDR2 534 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 LRRC58Q96CX6 371 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 CPPED1Q9BRF8 314 aaPredicted RBP14.07□□□□□ -0.16
LMX1B-204ENST00000561065 MALT1Q9UDY8 824 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 FLVCR1Q9Y5Y0 555 aa14.07□□□□□ -0.16
LMX1B-204ENST00000561065 LOC100653049A0A140TA62 436 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 FRS3O43559 492 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 MRPL33O75394 65 aaKnown RBP14.06□□□□□ -0.16
LMX1B-204ENST00000561065 RAD51DO75771 328 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 KRT34O76011 436 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 AHSA1O95433 338 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 CD3EP07766 207 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 ITGA5P08648 1049 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 DANCRP0C864 163 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 GTF2E2P29084 291 aaKnown RBP14.06□□□□□ -0.16
LMX1B-204ENST00000561065 BNIP2Q12982 314 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 PPA1Q15181 289 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 FBXW9Q5XUX1 488 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 TMEM225Q6GV28 225 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 NANOGP8Q6NSW7 305 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 ERICH5Q6P6B1 374 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 ULK3Q6PHR2 472 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 PAQR6Q6TCH4 344 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 NET1Q7Z628 596 aaPredicted RBP14.06□□□□□ -0.16
LMX1B-204ENST00000561065 CPLX4Q7Z7G2 160 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 COMTD1Q86VU5 262 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 RP9Q8TA86 221 aaKnown RBP14.06□□□□□ -0.16
LMX1B-204ENST00000561065 TMEM171Q8WVE6 324 aa14.06□□□□□ -0.16
LMX1B-204ENST00000561065 APH1AQ96BI3 265 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms