RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ZNF730Q6ZMV8 503 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 MAMDC2Q7Z304 686 aaPredicted RBP9.02□□□□□ -0.97
USP3-216ENST00000559873 ADGRG5Q8IZF4 528 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 CDK20Q8IZL9 346 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 RNF113BQ8IZP6 322 aaKnown RBP9.02□□□□□ -0.97
USP3-216ENST00000559873 ZNF808Q8N4W9 903 aaPredicted RBP9.02□□□□□ -0.97
USP3-216ENST00000559873 LINC00471Q8N535 108 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 SCAIQ8N9R8 606 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 ADPRHL1Q8NDY3 354 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 SLC25A36Q96CQ1 311 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 SGTBQ96EQ0 304 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 LRRC46Q96FV0 321 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 GMPPAQ96IJ6 420 aaPredicted RBP9.02□□□□□ -0.97
USP3-216ENST00000559873 PRSS27Q9BQR3 290 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 SRXN1Q9BYN0 137 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 NDEL1Q9GZM8 345 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 REEP1Q9H902 201 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 FKRPQ9H9S5 495 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 RNF122Q9H9V4 155 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 NMNAT1Q9HAN9 279 aaPredicted RBP9.02□□□□□ -0.97
USP3-216ENST00000559873 TMEM5Q9Y2B1 443 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 B3GALT5Q9Y2C3 310 aa9.02□□□□□ -0.97
USP3-216ENST00000559873 DIDO1Q9BTC0 2240 aaKnown RBP9.02□□□□□ -0.97
USP3-216ENST00000559873 AQP7P3A6NL99 342 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 FTCDNL1E5RQL4 147 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 J3KTA2 159 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 GNGT2O14610 69 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 SMAD9O15198 467 aaKnown RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 AKAP8O43823 692 aaKnown RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 CYTIPO60759 359 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 SS18L1O75177 396 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 SEMA7AO75326 666 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 UBR5O95071 2799 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 PRSS23O95084 383 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 OR6A2O95222 327 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 LYPD3O95274 346 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 TGM6O95932 706 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 IL18BPO95998 194 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 MT-ND1P03886 318 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 THY1P04216 161 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 IMPDH2P12268 514 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 FCGR1AP12314 374 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 FPR1P21462 350 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 CTSSP25774 331 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 RRM2P31350 389 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 CEACAM8P31997 349 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 PDK3Q15120 406 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 SLC25A35Q3KQZ1 300 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 TMEM201Q5SNT2 666 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 OTUD3Q5T2D3 398 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 XKRXQ6PP77 449 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 WDR88Q6ZMY6 472 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 MBOAT2Q6ZWT7 520 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 NANOGNBQ7Z5D8 188 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 MRGPRGQ86SM5 289 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 TSPYL5Q86VY4 417 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 NKAIN4Q8IVV8 208 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 RPRMLQ8N4K4 120 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 MARVELD2Q8N4S9 558 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 C9orf106Q8NAJ2 232 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 TMEM255BQ8WV15 326 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 CANT1Q8WVQ1 401 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 SDCCAG3Q96C92 435 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 INTS12Q96CB8 462 aaKnown RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 KTI12Q96EK9 354 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 DHRS1Q96LJ7 313 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 PTDSS2Q9BVG9 487 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 SF3B5Q9BWJ5 86 aaKnown RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 PIGMQ9H3S5 423 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 FANCFQ9NPI8 374 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 NANSQ9NR45 359 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 KLHL13Q9P2N7 655 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 RHCGQ9UBD6 479 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 ZNF629Q9UEG4 869 aaPredicted RBP9.01□□□□□ -0.97
USP3-216ENST00000559873 ZNF229Q9UJW7 825 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 RASD1Q9Y272 281 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 TESMINQ9Y4I5 508 aa9.01□□□□□ -0.97
USP3-216ENST00000559873 IGHV3-15A0A0B4J1V0 119 aa9□□□□□ -0.97
USP3-216ENST00000559873 A0A0G2JNJ9 132 aa9□□□□□ -0.97
USP3-216ENST00000559873 ENO4A6NNW6 628 aa9□□□□□ -0.97
USP3-216ENST00000559873 ZNF724A8MTY0 619 aa9□□□□□ -0.97
USP3-216ENST00000559873 FFAR1O14842 300 aa9□□□□□ -0.97
USP3-216ENST00000559873 FZD7O75084 574 aa9□□□□□ -0.97
USP3-216ENST00000559873 FKBP6O75344 327 aa9□□□□□ -0.97
USP3-216ENST00000559873 AQP8O94778 261 aa9□□□□□ -0.97
USP3-216ENST00000559873 DIRAS1O95057 198 aa9□□□□□ -0.97
USP3-216ENST00000559873 CST1P01037 141 aa9□□□□□ -0.97
USP3-216ENST00000559873 BGLAPP02818 100 aa9□□□□□ -0.97
USP3-216ENST00000559873 HIST1H2ABP04908 130 aa9□□□□□ -0.97
USP3-216ENST00000559873 IFI30P13284 250 aa9□□□□□ -0.97
USP3-216ENST00000559873 PTNP21246 168 aa9□□□□□ -0.97
USP3-216ENST00000559873 GRPRP30550 384 aa9□□□□□ -0.97
USP3-216ENST00000559873 ARHGDIAP52565 204 aa9□□□□□ -0.97
USP3-216ENST00000559873 SLC16A1P53985 500 aa9□□□□□ -0.97
USP3-216ENST00000559873 UGT2B15P54855 530 aa9□□□□□ -0.97
USP3-216ENST00000559873 ACTR3P61158 418 aa9□□□□□ -0.97
USP3-216ENST00000559873 ADORA2A-AS1P86434 159 aa9□□□□□ -0.97
USP3-216ENST00000559873 IL1RL1Q01638 556 aa9□□□□□ -0.97
USP3-216ENST00000559873 RASGEF1BQ0VAM2 473 aa9□□□□□ -0.97
USP3-216ENST00000559873 FOXD4Q12950 439 aaPredicted RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms