RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CYSRT1A8MQ03 144 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 E9PLN8 166 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 OR10H3O60404 316 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 SEMA7AO75326 666 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 TIPRLO75663 272 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 CCNB2O95067 398 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 IL2RAP01589 272 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 THY1P04216 161 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 STSP08842 583 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 IFI30P13284 250 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 FUT1P19526 365 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 FPR1P21462 350 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 CA7P43166 264 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 SLC9A3P48764 834 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 ERFP50548 548 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 CTBP2P56545 445 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 PER3P56645 1201 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 EGR4Q05215 589 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 RNPS1Q15287 305 aaKnown RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 OR7A5Q15622 319 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 ATP6AP1Q15904 470 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 CTU2Q2VPK5 515 aaKnown RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 TMEM225Q6GV28 225 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 PPP4R4Q6NUP7 873 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 PAQR6Q6TCH4 344 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 B3GNT6Q6ZMB0 384 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 H1FNTQ75WM6 255 aaPredicted RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 FGD2Q7Z6J4 655 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 TSEN54Q7Z6J9 526 aaKnown RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 DOLPP1Q86YN1 238 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 HIPK1Q86Z02 1210 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 CHERPQ8IWX8 916 aaKnown RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 NRMQ8IXM6 262 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 SVOPLQ8N434 492 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 OR5K1Q8NHB7 308 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 SLC7A13Q8TCU3 470 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 GNPDA2Q8TDQ7 276 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 GIPC3Q8TF64 312 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 TMEM255BQ8WV15 326 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 PYDC1Q8WXC3 89 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 TAAR8Q969N4 342 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 SLCO4A1Q96BD0 722 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 BPIFA2Q96DR5 249 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 KTI12Q96EK9 354 aaPredicted RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 CENPNQ96H22 339 aaPredicted RBP8.28□□□□□ -1.08
LDLR-210ENST00000559340 ADGRG7Q96K78 797 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 ARL5BQ96KC2 179 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 TRIB1Q96RU8 372 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 VKORC1Q9BQB6 163 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 TUBA1CQ9BQE3 449 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 OSBPL10Q9BXB5 764 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 COQ10BQ9H8M1 238 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 ZNF556Q9HAH1 456 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 GP6Q9HCN6 339 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 MAN2C1Q9NTJ4 1040 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 KLHL9Q9P2J3 617 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 ZNF229Q9UJW7 825 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 RASD1Q9Y272 281 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 B3GALT5Q9Y2C3 310 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 LYVE1Q9Y5Y7 322 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 FREM1Q5H8C1 2179 aa8.28□□□□□ -1.08
LDLR-210ENST00000559340 SPTBN1Q01082 2364 aaKnown RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 IGKV1D-42A0A075B6H8 117 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ARRDC5A6NEK1 342 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ENO4A6NNW6 628 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 EFCAB9A8MZ26 197 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ANKRD65E5RJM6 399 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 CCL21O00585 134 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 KPNA4O00629 521 aaPredicted RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 GPR171O14626 319 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ENTPD5O75356 428 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 WISP2O76076 250 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 OR7A10O76100 309 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 CH25HO95992 272 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 PLGP00747 810 aaPredicted RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 BGLAPP02818 100 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 CRHP06850 196 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 SAGP10523 405 aaPredicted RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 IMPDH2P12268 514 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ANXA8P13928 327 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 GSTM3P21266 225 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 SHC1P29353 583 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 TIMP3P35625 211 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 UGT2B15P54855 530 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 PMS2P3Q13401 168 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 PDK3Q15120 406 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 PON3Q15166 354 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 C3AR1Q16581 482 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ZNF74Q16587 644 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 MICAQ29983 383 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 EXOC3L2Q2M3D2 409 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 ACSF3Q4G176 576 aaPredicted RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 EMC4Q5J8M3 183 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 OTUD3Q5T2D3 398 aaPredicted RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 WDR88Q6ZMY6 472 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 TMPRSS11FQ6ZWK6 438 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 FCRLAQ7L513 359 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 TSPYL5Q86VY4 417 aaPredicted RBP8.27□□□□□ -1.09
LDLR-210ENST00000559340 ADPRHL1Q8NDY3 354 aa8.27□□□□□ -1.09
LDLR-210ENST00000559340 OR4K5Q8NGD3 323 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms