RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CHID1Q9BWS9 393 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 TRIM2Q9C040 744 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 SLC26A1Q9H2B4 701 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 OR51I1Q9H343 314 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 Q9H521 79 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 WDR54Q9H977 334 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 CXorf21Q9HAI6 301 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 Q9N2J8 555 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 TMEM9Q9P0T7 183 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 DHCR7Q9UBM7 475 aaKnown RBP4.69□□□□□ -1.66
LDLR-209ENST00000558528 COPS7AQ9UBW8 275 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 SEC14L3Q9UDX4 400 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 SH3BGRL2Q9UJC5 107 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 PACSIN3Q9UKS6 424 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 SLC9A8Q9Y2E8 581 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 MRPS2Q9Y399 296 aaKnown RBP4.69□□□□□ -1.66
LDLR-209ENST00000558528 LOXL2Q9Y4K0 774 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 LIPGQ9Y5X9 500 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 PLXND1Q9Y4D7 1925 aa4.69□□□□□ -1.66
LDLR-209ENST00000558528 COL5A1P20908 1838 aaPredicted RBP4.69□□□□□ -1.66
LDLR-209ENST00000558528 LRRK1Q38SD2 2015 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CENPEQ02224 2701 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 BOD1L1Q8NFC6 3051 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 A0A1W2PRV1 198 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 VSTM2BA6NLU5 285 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 C17orf100A8MU93 164 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 C17orf105B2RV13 164 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 C4orf51C9J302 202 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 HMGN4O00479 90 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CASQ2O14958 399 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 CLOCKO15516 846 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 HCRTR1O43613 425 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 LDB3O75112 727 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ALOX12BO75342 701 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 STX11O75558 287 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 KRT36O76013 467 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 NKX2-2O95096 273 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ZNF682O95780 498 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SERPINA1P01009 418 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CST1P01037 141 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ALPPP05187 535 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 FABP3P05413 133 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 BCHEP06276 602 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 DBIP07108 87 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 RAB40ALP0C0E4 278 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR12D1P0DN82 309 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ETFAP13804 333 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 EFNA1P20827 205 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 DRD5P21918 477 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SSTR4P31391 388 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 MC5RP33032 325 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PPICP45877 212 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SNU13P55769 128 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 RPS15P62841 145 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 MAT1AQ00266 395 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 GAB1Q13480 694 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SELPLGQ14242 412 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 C16orf72Q14CZ0 275 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ATP6AP1Q15904 470 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 EXT1Q16394 746 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ISXQ2M1V0 245 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 RFX4Q33E94 735 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 TBC1D25Q3MII6 688 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 GPAT3Q53EU6 434 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 LRRC23Q53EV4 343 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 EIPR1Q53HC9 387 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 IGSF11Q5DX21 431 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 MLIPQ5VWP3 458 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 DHRS7BQ6IAN0 325 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 ETFRF1Q6IPR1 90 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 HEPHL1Q6MZM0 1159 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PWWP2BQ6NUJ5 590 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 MFSD12Q6NUT3 480 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 TNFAIP8L2Q6P589 184 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 SLC29A4Q7RTT9 530 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PRSS41Q7RTY9 318 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PIP4P1Q86T03 277 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PTOV1Q86YD1 416 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 HIPK1Q86Z02 1210 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR4N5Q8IXE1 308 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SVOPLQ8N434 492 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 HORMAD2Q8N7B1 307 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 COX18Q8N8Q8 333 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 BMPERQ8N8U9 685 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ANKFN1Q8N957 763 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ICA1LQ8NDH6 482 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CHDHQ8NE62 594 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 C17orf47Q8NEP4 570 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR52R1Q8NGF1 315 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR5T3Q8NGG3 340 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR8K3Q8NH51 312 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR5AK3PQ8NH89 298 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PNPT1Q8TCS8 783 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 GPR151Q8TDV0 419 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SLC38A5Q8WUX1 472 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PYDC1Q8WXC3 89 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 GEMIN6Q8WXD5 167 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 SLC9A6Q92581 669 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SLC35B4Q969S0 331 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 EME1Q96AY2 570 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms