RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TAS2R8	Q9NYW2	309 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	KLRF1	Q9NZS2	232 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CBLC	Q9ULV8	474 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNE3	Q9Y6H6	103 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF831	Q5JPB2	1677 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC5A10	A0PJK1	596 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	KDM4E	B2RXH2	506 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	PEX12	O00623	359 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	YY2	O15391	372 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF208	O43345	1280 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	LGI1	O95970	557 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	GABRR1	P24046	479 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ATP5A1	P25705	553 aa	Known RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADH6	P28332	368 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TAS2R19	P59542	299 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SEC61A1	P61619	476 aa	Known RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSNK2A1	P68400	391 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	RASGEF1B	Q0VAM2	473 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF542P	Q5EBM4	170 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OTP	Q5XKR4	325 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	HTR3D	Q70Z44	454 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OVCH1	Q7RTY7	1134 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	GRAMD2A	Q8IUY3	354 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSNK2A3	Q8NEV1	391 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR4Q3	Q8NH05	313 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	THAP3	Q8WTV1	239 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC22A12	Q96S37	553 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	C12orf57	Q99622	126 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	NKX3-1	Q99801	234 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	PARP12	Q9H0J9	701 aa	Known RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	MEPE	Q9NQ76	525 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLDND1	Q9NY35	253 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FBXL21	Q9UKT6	434 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLXNB2	O15031	1838 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	LOC105371267	A0A1B0GV96	52 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF850	A8MQ14	1090 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FKTN	O75072	461 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TSPAN15	O95858	294 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CBX7	O95931	251 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CD22	P20273	847 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	EPHA1	P21709	976 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	GZMM	P51124	257 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FXYD4	P59646	89 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	IL13RA1	P78552	427 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	NFATC4	Q14934	902 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	BCL2A1	Q16548	175 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	VASN	Q6EMK4	673 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM81	Q6P7N7	255 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FJX1	Q86VR8	437 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	BPHL	Q86WA6	291 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	LSMEM1	Q8N8F7	131 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	BCL7C	Q8WUZ0	217 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TBC1D20	Q96BZ9	403 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SAMD11	Q96NU1	681 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	PDCD1LG2	Q9BQ51	273 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLSTN3	Q9BQT9	956 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	POTEKP	Q9BYX7	375 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC25A19	Q9HC21	320 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	DLL4	Q9NR61	685 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	MAFF	Q9ULX9	164 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	A4GNT	Q9UNA3	340 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FOXJ3	Q9UPW0	622 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR55	Q9Y2T6	319 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF726	A6NNF4	738 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RHPN2P1	A8MT19	583 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HEPACAM2	A8MVW5	462 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005		H7C417	338 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ERVH48-1	M5A8F1	160 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF593	O00488	134 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RDH16	O75452	317 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TPPP	O94811	219 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CR2	P20023	1033 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GDI1	P31150	447 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRPS1	P60891	318 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRA2B	P62995	288 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	MAT1A	Q00266	395 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GUCA2A	Q02747	115 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RIPPLY1	Q0D2K3	151 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ILF3	Q12906	894 aa	Known RBP eCLIP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC6A19	Q695T7	634 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TCEAL6	Q6IPX3	200 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	C3orf33	Q6P1S2	294 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM88	Q6PEY1	159 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC51B	Q86UW2	128 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADGRG3	Q86Y34	549 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF683	Q8IZ20	524 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	BPIFB2	Q8N4F0	458 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FRMD1	Q8N878	549 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF565	Q8N9K5	539 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLPP7	Q8NBV4	271 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR2A12	Q8NGT7	310 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	HERVK_113	Q902F9	699 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC35A4	Q96G79	324 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	MS4A4A	Q96JQ5	239 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR8D2	Q9GZM6	311 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CA5B	Q9Y2D0	317 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	BORCS7-ASMT	A0A0B4J1R7	106 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	TCRBV21S2A2	A0A5A6	115 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GFY	I3L273	518 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SYT7	O43581	403 aa		4.61	□□□□□ -1.67

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