RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ARMC1Q9NVT9 282 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 VNN3Q9NY84 501 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 CLCF1Q9UBD9 225 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 SEC14L4Q9UDX3 406 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 MEMO1Q9Y316 297 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF175Q9Y473 711 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 LYVE1Q9Y5Y7 322 aa12.57□□□□□ -0.4
VIPAS39-208ENST00000556412 E9PLN8 166 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 SMAD9O15198 467 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 CLOCKO15516 846 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 HNRNPRO43390 633 aaKnown RBP12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 OR10H3O60404 316 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 PLGP00747 810 aaPredicted RBP12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 SAGP10523 405 aaPredicted RBP12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 FCGR2AP12318 317 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 PLA2G2AP14555 144 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 GRPRP30550 384 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 GPR4P46093 362 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 IST1P53990 364 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 LTBQ06643 244 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF74Q16587 644 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 OTUD3Q5T2D3 398 aaPredicted RBP12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 FCRLAQ7L513 359 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 CCDC103Q8IW40 242 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 C10orf67Q8IYJ2 551 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 CDK20Q8IZL9 346 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 C9orf106Q8NAJ2 232 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 ABHD3Q8WU67 409 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 BPIFA2Q96DR5 249 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 VKORC1Q9BQB6 163 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 NAA11Q9BSU3 229 aaPredicted RBP12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 ASPNQ9BXN1 380 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 CALHM2Q9HA72 323 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 NANSQ9NR45 359 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 KLHL13Q9P2N7 655 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 CLEC4AQ9UMR7 237 aa12.56□□□□□ -0.4
VIPAS39-208ENST00000556412 A0A1B0GUH1 482 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 SH3PXD2BA1X283 911 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 CD8B2A6NJW9 211 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF814B7Z6K7 855 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 FTCDNL1E5RQL4 147 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 M0R082 166 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 EIF1BO60739 113 aaKnown RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 DEAF1O75398 565 aaPredicted RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 LDLRP01130 860 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 BGLAPP02818 100 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 HIST1H2ABP04908 130 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 GLI4P10075 376 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 FASP25445 335 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 SEM1Q6ZVN7 128 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 HIST3H2AQ7L7L0 130 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 MAMDC2Q7Z304 686 aaPredicted RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 ADGRE4PQ86SQ3 457 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 GPAT4Q86UL3 456 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 MARVELD2Q8N4S9 558 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 LRRC17Q8N6Y2 441 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 TMEM99Q8N816 258 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF417Q8TAU3 575 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 PIGXQ8TBF5 258 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 LRTOMTQ8WZ04 291 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 HIST1H2ACQ93077 130 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 WNT2BQ93097 391 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 INTS12Q96CB8 462 aaKnown RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 DUS3LQ96G46 650 aaKnown RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 FAM46AQ96IP4 442 aaKnown RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 ZNF587Q96SQ5 575 aaPredicted RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 TM9SF2Q99805 663 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 KRCC1Q9NPI7 259 aaPredicted RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 DNAJB9Q9UBS3 223 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 DNPH1O43598 174 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 RAMP1O60894 148 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 OR7A10O76100 309 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 CCNB2O95067 398 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 MT-ATP6P00846 226 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 IL2RAP01589 272 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 FCGR1AP12314 374 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 FUT1P19526 365 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 PMS2P3Q13401 168 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 TMEM225Q6GV28 225 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 ZFP1Q6P2D0 407 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 PAQR6Q6TCH4 344 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 AMIGO2Q86SJ2 522 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 RNF113BQ8IZP6 322 aaKnown RBP12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 RNF128Q8TEB7 428 aa12.55□□□□□ -0.4
VIPAS39-208ENST00000556412 MBD3L4A6NDZ8 208 aaPredicted RBP12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 MBD3L3A6NE82 208 aaPredicted RBP12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 MBD3L5A6NJ08 208 aaPredicted RBP12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 EFCAB9A8MZ26 197 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 J3QKU1 62 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 SERPINI2O75830 405 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 OR6A2O95222 327 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 MAKP20794 623 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 AHCYP23526 432 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 AGFG1P52594 562 aaKnown RBP12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 SIRPAP78324 504 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 PRKCDQ05655 676 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 MFSD13AQ14CX5 517 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 ATP6AP1Q15904 470 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 C4orf17Q53FE4 359 aa12.54□□□□□ -0.4
VIPAS39-208ENST00000556412 TMEM211Q6ICI0 200 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms