RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 THUMPD1Q9NXG2 353 aaKnown RBP10.4□□□□□ -0.74
SRP54-203ENST00000553544 CALML5Q9NZT1 146 aa10.4□□□□□ -0.74
SRP54-203ENST00000553544 PRDM4Q9UKN5 801 aa10.4□□□□□ -0.74
SRP54-203ENST00000553544 KCNS2Q9ULS6 477 aa10.4□□□□□ -0.74
SRP54-203ENST00000553544 CHST2Q9Y4C5 530 aa10.4□□□□□ -0.74
SRP54-203ENST00000553544 SPIN1Q9Y657 262 aaPredicted RBP10.4□□□□□ -0.74
SRP54-203ENST00000553544 GMEB1Q9Y692 573 aa10.4□□□□□ -0.74
SRP54-203ENST00000553544 A0A096LPI6 279 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 LOC100289279A0A1B0GTE1 492 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 ZNF724A8MTY0 619 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 SULT2B1O00204 365 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 CLIC1O00299 241 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 DYNC1I1O14576 645 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 DNPH1O43598 174 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 PMS2P2O95744 297 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 ACAA2P42765 397 aaKnown RBP10.39□□□□□ -0.75
SRP54-203ENST00000553544 SLC1A3P43003 542 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 MAP2K6P52564 334 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 CRISP3P54108 245 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 AQP5P55064 265 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 CSNK2A1P68400 391 aaPredicted RBP10.39□□□□□ -0.75
SRP54-203ENST00000553544 H3F3AP84243 136 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 RASGEF1BQ0VAM2 473 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 EPS8Q12929 822 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 GNA13Q14344 377 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 PDK3Q15120 406 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 RGNQ15493 299 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 TIMM23BQ5SRD1 257 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 ABLIM2Q6H8Q1 611 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 FAM166AQ6J272 317 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 SEZ6L2Q6UXD5 910 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 Q6ZT83 130 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 MTDHQ86UE4 582 aaKnown RBP10.39□□□□□ -0.75
SRP54-203ENST00000553544 VRK2Q86Y07 508 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 MSRB3Q8IXL7 192 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 PEX5LQ8IYB4 626 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 DEPDC4Q8N2C3 294 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 MUC15Q8N387 334 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 OR52P1PQ8NH57 321 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 C10orf105Q8TEF2 133 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 HTRA1Q92743 480 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 TMEM19Q96HH6 336 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 BCL2L10Q9HD36 194 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 RLIMQ9NVW2 624 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 SLC25A37Q9NYZ2 338 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 CCDC167Q9P0B6 97 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 OSGIN1Q9UJX0 560 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 POU2F3Q9UKI9 436 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 MGAT4BQ9UQ53 548 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 TRAPPC4Q9Y296 219 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 HDGFL3Q9Y3E1 203 aa10.39□□□□□ -0.75
SRP54-203ENST00000553544 IGKV3D-15A0A087WSY6 115 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 TRBV5-3A0A0A0MS03 114 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 TMED7-TICAM2A0A0A6YYA0 188 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 A0A0G2JPF8 293 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 CFAP73A6NFT4 308 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ZNF716A6NP11 495 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 HNRNPCL2B2RXH8 293 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 HNRNPCL3B7ZW38 293 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 E7EQL1 145 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ZNF208O43345 1280 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 HNRNPCL1O60812 293 aaKnown RBP10.38□□□□□ -0.75
SRP54-203ENST00000553544 EDF1O60869 148 aaKnown RBP10.38□□□□□ -0.75
SRP54-203ENST00000553544 LYZL6O75951 148 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 BCHEP06276 602 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 CSF3P09919 207 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 NUDT7P0C024 238 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 HNRNPCL4P0DMR1 293 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ZNF16P17020 682 aaPredicted RBP10.38□□□□□ -0.75
SRP54-203ENST00000553544 GGT1P19440 569 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 IGFBP5P24593 272 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 EDNRAP25101 427 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 OR3A2P47893 321 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 FABP6P51161 128 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ATP4BP51164 291 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 POLR2HP52434 150 aaKnown RBP10.38□□□□□ -0.75
SRP54-203ENST00000553544 EFNA4P52798 201 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 FADDQ13158 208 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 LIN52Q52LA3 116 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 PAGE3Q5JUK9 113 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 RNF220Q5VTB9 566 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 PRAMEF8Q5VWM4 474 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 PRAMEF7Q5VXH5 474 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 C11orf71Q6IPW1 123 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 SLC22A25Q6T423 547 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 TMEM108Q6UXF1 575 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ZNF836Q6ZNA1 936 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ZNF440Q8IYI8 595 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 SPDL1Q96EA4 605 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 ZNF300Q96RE9 604 aaPredicted RBP10.38□□□□□ -0.75
SRP54-203ENST00000553544 OR11A1Q9GZK7 315 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 RAD21L1Q9H4I0 556 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 CHODLQ9H9P2 273 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 SLAMF8Q9P0V8 285 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 TMEM181Q9P2C4 612 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 TMED7Q9Y3B3 224 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 PMF1-BGLAPU3KQ54 211 aa10.38□□□□□ -0.75
SRP54-203ENST00000553544 TMEM72A0PK05 275 aa10.37□□□□□ -0.75
SRP54-203ENST00000553544 SLC35F4A4IF30 521 aa10.37□□□□□ -0.75
SRP54-203ENST00000553544 H7C417 338 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms