RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NPFFR2Q9Y5X5 522 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 NUBP2Q9Y5Y2 271 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 COL4A2P08572 1712 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 GPR171O14626 319 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 OR10H2O60403 315 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 NOS1APO75052 506 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 H2AFB2P0C5Z0 115 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ANXA3P12429 323 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SELENOPP49908 381 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ERVK-25P63136 954 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ACTC1P68032 377 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ACTA1P68133 377 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 MAT1AQ00266 395 aaKnown RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SNTB2Q13425 540 aaKnown RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 KLF9Q13886 244 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ZSWIM7Q19AV6 140 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 LGALSLQ3ZCW2 172 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 CDONQ4KMG0 1287 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 OTPQ5XKR4 325 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 NUDT18Q6ZVK8 323 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 LINGO2Q7L985 606 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 FAM109AQ8N4B1 249 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF527Q8NB42 609 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RCBTB1Q8NDN9 531 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RGP1Q92546 391 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SIPA1Q96FS4 1042 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 HSPA12BQ96MM6 686 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SYNDIG1Q9H7V2 258 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 HCN3Q9P1Z3 774 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 NCDNQ9UBB6 729 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SERTAD3Q9UJW9 196 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 PCOLCE2Q9UKZ9 415 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ING4Q9UNL4 249 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RCE1Q9Y256 329 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 PCDHGA9Q9Y5G4 932 aaKnown RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 FRYLO94915 3013 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 A0A0A6YYC8 382 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 TRAV1-2A0A0B4J238 106 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 A0A1B0GTH9 108 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 G3V3Q6 166 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 I3L1I5 382 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 FOXS1O43638 330 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ICMTO60725 284 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RPP14O95059 124 aaKnown RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 NDUFB2O95178 105 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 CRYZL1O95825 349 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 IFNGP01579 166 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 UCHL1P09936 223 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ST6GAL1P15907 406 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF10P21506 573 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RPS27P42677 84 aaKnown RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 GBX2P52951 348 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 KIAA1024LP59773 190 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 CAMK2DQ13557 499 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 FGFBP1Q14512 234 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 POU4F3Q15319 338 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 HSD17B12Q53GQ0 312 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 C9orf50Q5SZB4 431 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 FAM199XQ6PEV8 388 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 TEX261Q6UWH6 196 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 KIAA1324Q6UXG2 1013 aaKnown RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 LINC00114Q6XXX2 140 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 Q6ZTK2 550 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 OR8H3Q8N146 312 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 METTL27Q8N6F8 245 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 TEX19Q8NA77 164 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF511Q8NB15 262 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 NPEPL1Q8NDH3 523 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF680Q8NEM1 530 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 OR4C3Q8NH37 302 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 MOSPD2Q8NHP6 518 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 PHOSPHO2Q8TCD6 241 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RSC1A1Q92681 617 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 RNF166Q96A37 237 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SLC25A38Q96DW6 304 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 WDR89Q96FK6 387 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 TRAF4Q9BUZ4 470 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 DPCDQ9BVM2 203 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 STMN3Q9NZ72 180 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 CPNE7Q9UBL6 633 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 KLK11Q9UBX7 282 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 ELF5Q9UKW6 265 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SPATA2Q9UM82 520 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 U3KQ87 197 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 SPACA6W5XKT8 324 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 TMEM131Q92545 1883 aa6.87□□□□□ -1.31
LIMA1-213ENST00000552720 VPS13AQ96RL7 3174 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CIB4A0PJX0 185 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 EPOPA6NHQ4 379 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SSNA1O43805 119 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SCO1O75880 301 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ZFPL1O95159 310 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 MPC2O95563 127 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR2T7P0C7T2 308 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SPI1P17947 270 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SRMP19623 302 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 VEGFCP49767 419 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 BTG2P78543 158 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CD276Q5ZPR3 534 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ZCCHC12Q6PEW1 402 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms