RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CH25HO95992 272 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 BGLAPP02818 100 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 IFI30P13284 250 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 ENPP1P22413 925 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 SLC35A1P78382 337 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 LAPTM4AQ15012 233 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 SF3B4Q15427 424 aaKnown RBP eCLIP18.96■□□□□ 0.632e-7■■■■□ 25.8
VPS29-206ENST00000549578 NSUN5P2Q63ZY6 315 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 B3GNT6Q6ZMB0 384 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 SEM1Q6ZVN7 128 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 NCCRP1Q6ZVX7 275 aaPredicted RBP18.96■□□□□ 0.63
VPS29-206ENST00000549578 RRM2BQ7LG56 351 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 OR4K5Q8NGD3 323 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 DNAJB9Q9UBS3 223 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 SEC14L4Q9UDX3 406 aa18.96■□□□□ 0.63
VPS29-206ENST00000549578 MCTS1Q9ULC4 181 aaKnown RBP18.96■□□□□ 0.63
VPS29-206ENST00000549578 CD8B2A6NJW9 211 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 ZNF814B7Z6K7 855 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 SMAD9O15198 467 aaKnown RBP18.95■□□□□ 0.62
VPS29-206ENST00000549578 CLOCKO15516 846 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 HNRNPRO43390 633 aaKnown RBP18.95■□□□□ 0.62
VPS29-206ENST00000549578 AQP8O94778 261 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 AKR7A3O95154 331 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 HOXD4P09016 255 aaPredicted RBP18.95■□□□□ 0.62
VPS29-206ENST00000549578 HMGA2P52926 109 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 ZNF74Q16587 644 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 ZFP1Q6P2D0 407 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 LRTOMTQ8WZ04 291 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 PRRG4Q9BZD6 226 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 CALHM2Q9HA72 323 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 TMCC3Q9ULS5 477 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 ZNF175Q9Y473 711 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 GTF2E2P29084 291 aaKnown RBP18.95■□□□□ 0.62
VPS29-206ENST00000549578 GRPRP30550 384 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 AGFG1P52594 562 aaKnown RBP18.95■□□□□ 0.62
VPS29-206ENST00000549578 SLC46A3Q7Z3Q1 461 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 P4HA3Q7Z4N8 544 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 FJX1Q86VR8 437 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 C10orf67Q8IYJ2 551 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 RNF113BQ8IZP6 322 aaKnown RBP18.95■□□□□ 0.62
VPS29-206ENST00000549578 MARVELD2Q8N4S9 558 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 LRRC17Q8N6Y2 441 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 TMEM99Q8N816 258 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 C9orf106Q8NAJ2 232 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 OR6S1Q8NH40 331 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 BPIFA2Q96DR5 249 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 ZHX1-C8orf76Q96EF9 292 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 SGTBQ96EQ0 304 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 TTYH2Q9BSA4 534 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 S100A14Q9HCY8 104 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 MEMO1Q9Y316 297 aa18.95■□□□□ 0.62
VPS29-206ENST00000549578 ARHGAP21Q5T5U3 1957 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 E9PLN8 166 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 M0R082 166 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 CCL21O00585 134 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 DNPH1O43598 174 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 RAMP1O60894 148 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 DEAF1O75398 565 aaPredicted RBP18.94■□□□□ 0.62
VPS29-206ENST00000549578 LDLRP01130 860 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 GLI4P10075 376 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 MAKP20794 623 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 FASP25445 335 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 CTBP2P56545 445 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 H3F3AP84243 136 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 PRKCDQ05655 676 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 ATP6AP1Q15904 470 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 PAQR6Q6TCH4 344 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 FCRLAQ7L513 359 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 TMEM179BQ7Z7N9 219 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 AMIGO2Q86SJ2 522 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 CCDC103Q8IW40 242 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 ZNF417Q8TAU3 575 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 ABHD3Q8WU67 409 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 STMN2Q93045 179 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 WNT2BQ93097 391 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 ZNF587Q96SQ5 575 aaPredicted RBP18.94■□□□□ 0.62
VPS29-206ENST00000549578 VKORC1Q9BQB6 163 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 NTN4Q9HB63 628 aa18.94■□□□□ 0.62
VPS29-206ENST00000549578 C6orf203Q9P0P8 240 aaPredicted RBP18.94■□□□□ 0.62
VPS29-206ENST00000549578 OR10H3O60404 316 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 EIF1BO60739 113 aaKnown RBP18.93■□□□□ 0.62
VPS29-206ENST00000549578 E2F6O75461 281 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 OR7A10O76100 309 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 TOXO94900 526 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 MT-ATP6P00846 226 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 IGF2P01344 180 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 FCGR1AP12314 374 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 PLA2G2AP14555 144 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 FUT1P19526 365 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 GPR4P46093 362 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 PMPCAQ10713 525 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 OTUD3Q5T2D3 398 aaPredicted RBP18.93■□□□□ 0.62
VPS29-206ENST00000549578 HMBOX1Q6NT76 420 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 OR9Q2Q8NGE9 314 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 PIGXQ8TBF5 258 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 RNF128Q8TEB7 428 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 FAM46AQ96IP4 442 aaKnown RBP18.93■□□□□ 0.62
VPS29-206ENST00000549578 DMRTA2Q96SC8 542 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 ASPNQ9BXN1 380 aa18.93■□□□□ 0.62
VPS29-206ENST00000549578 FKRPQ9H9S5 495 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms