RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 PARD6AQ9NPB6 346 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 COPS3Q9UNS2 423 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 SF3B6Q9Y3B4 125 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 CCDC163A0A0D9SF12 145 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 A0A0G2JPF8 293 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 HNRNPCL3B7ZW38 293 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 GLAP06280 429 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 HNRNPCL4P0DMR1 293 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 SLC6A1P30531 599 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 GBX2P52951 348 aaPredicted RBP13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 ATP12AP54707 1039 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 HSF2Q03933 536 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 GNA13Q14344 377 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 ZIC1Q15915 447 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 FAAP20Q6NZ36 180 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 FIGNL1Q6PIW4 674 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 FAM111BQ6SJ93 734 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 BMP8AQ7Z5Y6 402 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 ELMOD3Q96FG2 381 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 IFT27Q9BW83 186 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 PINK1Q9BXM7 581 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 ENKD1Q9H0I2 346 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 ZNF768Q9H5H4 540 aaKnown RBP13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 FAM60AQ9NP50 221 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 SLC6A20Q9NP91 592 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 NDOR1Q9UHB4 597 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 NCOR2Q9Y618 2525 aa13.18□□□□□ -0.3
SFSWAP-210ENST00000541286 ATMQ13315 3056 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 TMEM129A0AVI4 362 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 GPR171O14626 319 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SMAD9O15198 467 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 EMC8O43402 210 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 TCRBP04435 133 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 CLUP10909 449 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 RIN1Q13671 783 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 BICRALQ6AI39 1079 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 ABHD17CQ6PCB6 329 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 ZNF613Q6PF04 617 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 GDF7Q7Z4P5 450 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 TMEM151BQ8IW70 566 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 TMEM99Q8N816 258 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 OR2T33Q8NG76 320 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 PFN4Q8NHR9 129 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 CREB3L1Q96BA8 519 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 ELP4Q96EB1 424 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 NUDT22Q9BRQ3 303 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 FUZQ9BT04 418 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 KIR3DX1Q9H7L2 352 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 FOLH1BQ9HBA9 442 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 LMO7DNF2Z398 122 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 DNAJB6O75190 326 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 CLEC3AO75596 197 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 HOXC4P09017 264 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 ANKRD34CP0C6C1 535 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 BMP7P18075 431 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 BLKP51451 505 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 CLLU1Q5K131 121 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 MZT2AQ6P582 158 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 OR56A1Q8NGH5 318 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 OR13C5Q8NGS8 318 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SAP25Q8TEE9 199 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 OSTF1Q92882 214 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SLC35A4Q96G79 324 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 HCAR1Q9BXC0 346 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 ADAM30Q9UKF2 790 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 CACNG2Q9Y698 323 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SIRT4Q9Y6E7 314 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SPENQ96T58 3664 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 hCG_1807616A0A1W2PRN6 198 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 FAM74A7A6NL05 159 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 PRR33A8MZF0 331 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 ARRB1P49407 418 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 HCCSP53701 268 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 UBE2IP63279 158 aaKnown RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 PGGHGQ32M88 737 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 FAM74A3Q4VXF1 159 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SIAH3Q8IW03 269 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 METTL27Q8N6F8 245 aaPredicted RBP13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 SLC38A3Q99624 504 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 MAP3K3Q99759 626 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 OR10A4Q9H209 315 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 GHITMQ9H3K2 345 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 TAS2R7Q9NYW3 318 aa13.17□□□□□ -0.3
SFSWAP-210ENST00000541286 TRAV27A0A087WT01 109 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 CTSVO60911 334 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 B3GALNT1O75752 331 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 PTHLHP12272 177 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 TBXA2RP21731 343 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 EPHA8P29322 1005 aaPredicted RBP13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 OMPP47874 163 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 GAS1P54826 345 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 ARHGAP19Q14CB8 494 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 COL28A1Q2UY09 1125 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 TMEM88Q6PEY1 159 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 FAM198BQ6UWH4 519 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 NLRC3Q7RTR2 1065 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 AVL9Q8NBF6 648 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 OR7G2Q8NG99 324 aa13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 ZC3H10Q96K80 434 aaKnown RBP13.16□□□□□ -0.3
SFSWAP-210ENST00000541286 DMRTA2Q96SC8 542 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms