RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 FRG2BQ96QU4 278 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 VPS11Q9H270 941 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 RHOJQ9H4E5 214 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 ELOVL6Q9H5J4 265 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 IPPKQ9H8X2 491 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 TNFRSF19Q9NS68 423 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 PURGQ9UJV8 347 aaKnown RBP7.84□□□□□ -1.16
USP28-205ENST00000537706 RNF11Q9Y3C5 154 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 A0A1W2PPW3 197 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 GXYLT2A0PJZ3 443 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 AGAP5A6NIR3 686 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 ZNF716A6NP11 495 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 COPEO14579 308 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 DNPH1O43598 174 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 RP2O75695 350 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 IGFBP1P08833 259 aaPredicted RBP7.83□□□□□ -1.16
USP28-205ENST00000537706 PRKCAP17252 672 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 MGAT5Q09328 741 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 GTF2H2Q13888 395 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 TSPO2Q5TGU0 170 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 GTF2H2CQ6P1K8 395 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 TMEM107Q6UX40 140 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 TIFABQ6ZNK6 161 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 PIK3R3Q92569 461 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 NAA11Q9BSU3 229 aaPredicted RBP7.83□□□□□ -1.16
USP28-205ENST00000537706 IQCGQ9H095 443 aaKnown RBP7.83□□□□□ -1.16
USP28-205ENST00000537706 ALG9Q9H6U8 611 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 NMRAL1Q9HBL8 299 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 SLC17A7Q9P2U7 560 aa7.83□□□□□ -1.16
USP28-205ENST00000537706 TNPO3Q9Y5L0 923 aaKnown RBP7.83□□□□□ -1.16
USP28-205ENST00000537706 A0A096LPK6 155 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 IGKV1D-16P01601 117 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 IGLV1-44P01699 117 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 IL3P08700 152 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 GFAPP14136 432 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 STMN1P16949 149 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ALDH3B1P43353 468 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SERPINB4P48594 390 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 CCNG1P51959 295 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SELENOVP59797 346 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ZNF117Q03924 483 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 PCGF3Q3KNV8 242 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SGO1Q5FBB7 561 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 TECRLQ5HYJ1 363 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 DEFB121Q5J5C9 76 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 KRT80Q6KB66 452 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 TMCO5AQ8N6Q1 288 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 DEFB108BQ8NET1 73 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 OR1K1Q8NGR3 316 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 MAGEE2Q8TD90 523 aaPredicted RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 ACMSDQ8TDX5 336 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SNX33Q8WV41 574 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 MRPL37Q9BZE1 423 aaKnown RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 HOXD1Q9GZZ0 328 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SERHL2Q9H4I8 314 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 NOX4Q9NPH5 578 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 KLHL14Q9P2G3 628 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 TXNDC16Q9P2K2 825 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 WIPI2Q9Y4P8 454 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 HEATR1Q9H583 2144 aaKnown RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 IGHV2OR16-5A0A0B4J2B6 119 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 GNG14A0A1W2PPG7 69 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 HMX2A2RU54 273 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ISPDA4D126 451 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ZNF587BE7ETH6 402 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 UBXN8O00124 270 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 TPD52L2O43399 206 aaKnown RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 CDC14BO60729 498 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SKAP2O75563 359 aaPredicted RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 DNAJC8O75937 253 aaPredicted RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 PPP1R3DO95685 299 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SFTPBP07988 381 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 CBR1P16152 277 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ATP6V1C1P21283 382 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ARR3P36575 388 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 PROK1P58294 105 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SLC3A1Q07837 685 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 CBFBQ13951 182 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SLC25A53Q5H9E4 307 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 KLF17Q5JT82 389 aaPredicted RBP7.82□□□□□ -1.16
USP28-205ENST00000537706 TMEM154Q6P9G4 183 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 ZNF620Q6ZNG0 422 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 GOLGA7Q7Z5G4 137 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 OR2L13Q8N349 312 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 PARP8Q8N3A8 854 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 CCDC63Q8NA47 563 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 GPR119Q8TDV5 335 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 TMEM234Q8WY98 164 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 SYT3Q9BQG1 590 aa7.82□□□□□ -1.16
USP28-205ENST00000537706 UPK1AO00322 258 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 H6PDO95479 791 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 PMS2P2O95744 297 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 ZNF12P17014 697 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 FKBP2P26885 142 aaKnown RBP7.81□□□□□ -1.16
USP28-205ENST00000537706 GSTM5P46439 218 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 RNF144AP50876 292 aaPredicted RBP7.81□□□□□ -1.16
USP28-205ENST00000537706 CCR4P51679 360 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 NKPD1Q17RQ9 610 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 HFEQ30201 348 aa7.81□□□□□ -1.16
USP28-205ENST00000537706 SYT14P1Q58G82 188 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms