RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CDH11P55287 796 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 GABRA6Q16445 453 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 C1orf140Q5VVS0 124 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 BLOC1S3Q6QNY0 202 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 AAED1Q7RTV5 226 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 FUNDC1Q8IVP5 155 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 DEPDC4Q8N2C3 294 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 OR9K2Q8NGE7 335 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 TMEM45BQ96B21 275 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 SLC7A10Q9NS82 523 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 NPAP1Q9NZP6 1156 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 RPS6KB2Q9UBS0 482 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 DCTN4Q9UJW0 460 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 POU2F3Q9UKI9 436 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 CHST2Q9Y4C5 530 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 MAGED1Q9Y5V3 778 aaPredicted RBP13.59□□□□□ -0.23
CPSF1-211ENST00000533492 SLC25A15Q9Y619 301 aa13.59□□□□□ -0.23
CPSF1-211ENST00000533492 AQP7P3A6NL99 342 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 SHISA9B4DS77 424 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 M0R1B8 84 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 KRT33AO76009 404 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 VAMP5O95183 116 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 AHSA1O95433 338 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 ITGA5P08648 1049 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 ETS2P15036 469 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 FOXG1P55316 489 aaPredicted RBP13.58□□□□□ -0.24
CPSF1-211ENST00000533492 HOXC5Q00444 222 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 ETFDHQ16134 617 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 CLEC12BQ2HXU8 276 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 PGGHGQ32M88 737 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 AGKQ53H12 422 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 TTMPQ5BVD1 217 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 LRIF1Q5T3J3 769 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 GCNT6Q5T4J0 391 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 TSPO2Q5TGU0 170 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 SLC22A25Q6T423 547 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 KRT73Q86Y46 540 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 POMGNT2Q8NAT1 580 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 NFKBIDQ8NI38 313 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 STK35Q8TDR2 534 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 SLC35B4Q969S0 331 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 C3orf49Q96BT1 292 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 C1QTNF6Q9BXI9 259 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 PIF1Q9H611 641 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 INTS9Q9NV88 658 aaKnown RBP13.58□□□□□ -0.24
CPSF1-211ENST00000533492 SLC25A37Q9NYZ2 338 aa13.58□□□□□ -0.24
CPSF1-211ENST00000533492 HEATR1Q9H583 2144 aaKnown RBP13.58□□□□□ -0.24
CPSF1-211ENST00000533492 ELOA3DA6NLF2 546 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 EVPLLA8MZ36 301 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 PDLIM1O00151 329 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 FRS3O43559 492 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 CDH2P19022 906 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 CD40P25942 277 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 GTF2E2P29084 291 aaKnown RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 MPGP29372 298 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 IRX1P78414 480 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 CDK6Q00534 326 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 TNK1Q13470 666 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 VEZF1Q14119 521 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 SQLEQ14534 574 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 ELOA3BQ3SY89 546 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 PAGE3Q5JUK9 113 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 AGAP6Q5VW22 663 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 REEP3Q6NUK4 255 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 KLHL24Q6TFL4 600 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 HDXQ7Z353 690 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 ABHD12BQ7Z5M8 362 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 ZIC4Q8N9L1 334 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 C1orf162Q8NEQ5 155 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 ELOA3Q8NG57 546 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 SLC25A36Q96CQ1 311 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 HS6ST2Q96MM7 605 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 ZNF385AQ96PM9 386 aaKnown RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 TRAF4Q9BUZ4 470 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 SPATA5L1Q9BVQ7 753 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 SLCO5A1Q9H2Y9 848 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 RABEP2Q9H5N1 569 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 TMEM45AQ9NWC5 275 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 VAPAQ9P0L0 249 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 SLAMF8Q9P0V8 285 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.57□□□□□ -0.24
CPSF1-211ENST00000533492 CORO2BQ9UQ03 480 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 AMDHD2Q9Y303 409 aa13.57□□□□□ -0.24
CPSF1-211ENST00000533492 HMGB1P1B2RPK0 211 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-211ENST00000533492 ARAFP10398 606 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 HOXB9P17482 250 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-211ENST00000533492 PRKAR1BP31321 381 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 ATP4BP51164 291 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 PRPS1P60891 318 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 MSRB3Q8IXL7 192 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 C17orf78Q8N4C9 275 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 WDR31Q8NA23 367 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 MFSD8Q8NHS3 518 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 SLC17A5Q9NRA2 495 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 SLC13A4Q9UKG4 626 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 RASD1Q9Y272 281 aa13.56□□□□□ -0.24
CPSF1-211ENST00000533492 CSPG4Q6UVK1 2322 aa13.55□□□□□ -0.24
CPSF1-211ENST00000533492 TMEM229AB2RXF0 380 aa13.55□□□□□ -0.24
CPSF1-211ENST00000533492 E7EQL1 145 aa13.55□□□□□ -0.24
CPSF1-211ENST00000533492 NPIPB7O75200 414 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms