RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110		A6NNC1	897 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SERPINE3	A8MV23	424 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SEC14L6	B5MCN3	397 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	NPIPA7	E9PJI5	369 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CLIC2	O15247	247 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ARPC5	O15511	151 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PPIH	O43447	177 aa	Known RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SSX4	O60224	188 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	LYPLA1	O75608	230 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	AQP8	O94778	261 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	DDAH2	O95865	285 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	MT-ND4L	P03901	98 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	NPIPA8	P0DM63	369 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ALPPL2	P10696	532 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	FCGR2A	P12318	317 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CCL2	P13500	99 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF25	P17030	456 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RCC1	P18754	421 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CD72	P21854	359 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PCMT1	P22061	227 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	C21orf33	P30042	268 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	NNMT	P40261	264 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RPL21	P46778	160 aa	Known RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RABIF	P47224	123 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CDX1	P47902	265 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RFX2	P48378	723 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	KHK	P50053	298 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CCR6	P51684	374 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ARSE	P51690	589 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	METAP1	P53582	386 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CLDN20	P56880	219 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TAS2R39	P59534	338 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	MRPS10	P82664	201 aa	Known RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TLE2	Q04725	743 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SLAMF1	Q13291	335 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ENPP2	Q13822	863 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PTK6	Q13882	451 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	VEZF1	Q14119	521 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	MESD	Q14696	234 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SHH	Q15465	462 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TRAM1	Q15629	374 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ATP6AP1	Q15904	470 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RAB11B	Q15907	218 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	EXOC3L2	Q2M3D2	409 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	BCL7A	Q4VC05	210 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	C9orf152	Q5JTZ5	239 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ENTPD8	Q5MY95	495 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110		Q5PR19	223 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	HIST2H3PS2	Q5TEC6	136 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	NXNL2	Q5VZ03	156 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	AWAT2	Q6E213	333 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	EIF5AL1	Q6IS14	154 aa	Known RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	FBXO46	Q6PJ61	603 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	HACD2	Q6Y1H2	254 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	GDPGP1	Q6ZNW5	385 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	VTCN1	Q7Z7D3	282 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM135	Q86UB9	458 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OAF	Q86UD1	273 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PLD3	Q8IV08	490 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	DEFB107A	Q8IZN7	70 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	FAM58A	Q8N1B3	248 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	FBXO39	Q8N4B4	442 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	MINDY1	Q8N5J2	469 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	MS4A15	Q8N5U1	240 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CCDC71L	Q8N9Z2	235 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF383	Q8NA42	475 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	STEAP2	Q8NFT2	490 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OR6J1	Q8NGC5	347 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OR5B17	Q8NGF7	314 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OR5M8	Q8NGP6	311 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OR2T11	Q8NH01	316 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OR14A16	Q8NHC5	309 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM174	Q8WUU8	243 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	FAR1	Q8WVX9	515 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	BIRC7	Q96CA5	298 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CENPN	Q96H22	339 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM19	Q96HH6	336 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SLC41A2	Q96JW4	573 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	LRR1	Q96L50	414 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PACRG	Q96M98	296 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	GFM1	Q96RP9	751 aa	Known RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PHB2	Q99623	299 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SLC30A2	Q9BRI3	323 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	ACTR6	Q9GZN1	396 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	CHST5	Q9GZS9	411 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	MFF	Q9GZY8	342 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PIGM	Q9H3S5	423 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	AAMDC	Q9H7C9	122 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	FBXO6	Q9NRD1	293 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SLC2A9	Q9NRM0	540 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SPANXA1	Q9NS26	97 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	C14orf105	Q9NVL8	296 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SOHLH2	Q9NX45	425 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	SCN3B	Q9NY72	215 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	RASL12	Q9NYN1	266 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	HAO2	Q9NYQ3	351 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	USE1	Q9NZ43	259 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	PDP1	Q9P0J1	537 aa	Predicted RBP	5.11	□□□□□ -1.59
CD44-231	ENST00000531110	GCNT4	Q9P109	453 aa		5.11	□□□□□ -1.59
CD44-231	ENST00000531110	OPTC	Q9UBM4	332 aa		5.11	□□□□□ -1.59

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