RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 E7ENQ6 273 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 E9PQ18 207 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 G3V3Y1 287 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 ALDH3A1P30838 453 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 ALDH3B2P48448 385 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 SPAG1Q07617 926 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 DYNC1I2Q13409 638 aaKnown RBP5.84□□□□□ -1.47
LSM1-202ENST00000520286 LAGE3Q14657 143 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 LTB4RQ15722 352 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 NDUFA9Q16795 377 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 GPRIN3Q6ZVF9 776 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 NLRP9Q7RTR0 991 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 C15orf54Q8N8G6 183 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 SPATA4Q8NEY3 305 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 OR9A4Q8NGU2 314 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 ADAMTS16Q8TE57 1224 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 TRUB1Q8WWH5 349 aaKnown RBP5.84□□□□□ -1.47
LSM1-202ENST00000520286 ZNF599Q96NL3 588 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 OR5B2Q96R09 309 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 PSMB7Q99436 277 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 IKZF5Q9H5V7 419 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 GNB4Q9HAV0 340 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 SLC17A5Q9NRA2 495 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 IMPAD1Q9NX62 359 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 MEMO1Q9Y316 297 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 BCORQ6W2J9 1755 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 ARFGEF2Q9Y6D5 1785 aa5.84□□□□□ -1.47
LSM1-202ENST00000520286 SIPA1L3O60292 1781 aaPredicted RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 XKRY2A2RUG3 117 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 H0Y8G0 127 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 H3BMQ9 156 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 GALR3O60755 368 aaPredicted RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 FLOT1O75955 427 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 KRT14P02533 472 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 ALOX5P09917 674 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 H2AFZP0C0S5 128 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 CT45A10P0DMU9 189 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 PNMTP11086 282 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 NQO1P15559 274 aaKnown RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 ACADSP16219 412 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 TCP1P17987 556 aaKnown RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 P2RY1P47900 373 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 HMGCS2P54868 508 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 ST3GAL3Q11203 375 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 RAB40BQ12829 278 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 DPYSL3Q14195 570 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 C14orf177Q52M58 125 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 PHYHD1Q5SRE7 291 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 GFI1BQ5VTD9 330 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 ZYG11AQ6WRX3 759 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 Q6ZTC4 211 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 SLC47A2Q86VL8 602 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 BADQ92934 168 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 NT5C3BQ969T7 300 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 ZNF689Q96CS4 500 aaPredicted RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 ZBED6CLQ96FA7 236 aaPredicted RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 TMEM80Q96HE8 168 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 ZNF317Q96PQ6 595 aaPredicted RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 TUBGCP2Q9BSJ2 902 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 TRIM15Q9C019 465 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 OPN3Q9H1Y3 402 aaPredicted RBP5.83□□□□□ -1.48
LSM1-202ENST00000520286 MYOZ2Q9NPC6 264 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 NMRK1Q9NWW6 199 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 SLC2A6Q9UGQ3 507 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 GUCA1BQ9UMX6 200 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 LRRC42Q9Y546 428 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 GMEB1Q9Y692 573 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 SCN11AQ9UI33 1791 aa5.83□□□□□ -1.48
LSM1-202ENST00000520286 NID2Q14112 1375 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 SCN7AQ01118 1682 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 LRP5LA4QPB2 252 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 ZNF840PA6NDX5 716 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 E7EWF7 191 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 E9PAM4 449 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 VENTXO95231 258 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 HPP00738 406 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 SERPINA3P01011 423 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 MMP11P24347 488 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 PTBP1P26599 531 aaKnown RBP eCLIP5.82□□□□□ -1.488e-8■■■■■ 45.8
LSM1-202ENST00000520286 CASP4P49662 377 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 NCALDP61601 193 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 VLDLRP98155 873 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 PPP1R7Q15435 360 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 TIGITQ495A1 244 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 CCDC122Q5T0U0 273 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 WSCD1Q658N2 575 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 KCTD16Q68DU8 428 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 WDR59Q6PJI9 974 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 METTL7BQ6UX53 244 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 CCBE1Q6UXH8 406 aaPredicted RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 TAS2R42Q7RTR8 314 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 SLC25A42Q86VD7 318 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 IFT20Q8IY31 132 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 ZNF440Q8IYI8 595 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 DHRSXQ8N5I4 330 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 Q8N9G6 341 aaPredicted RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 C17orf47Q8NEP4 570 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 OR51G2Q8NGK0 314 aa5.82□□□□□ -1.48
LSM1-202ENST00000520286 TFB1MQ8WVM0 346 aaKnown RBP5.82□□□□□ -1.48
LSM1-202ENST00000520286 RAPGEF5Q92565 580 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms