RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 LRRC28Q86X40 367 aaPredicted RBP10.84□□□□□ -0.67
SYNPO-204ENST00000519664 PLPP6Q8IY26 295 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ALG12Q9BV10 488 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ACTR6Q9GZN1 396 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ELOVL3Q9HB03 270 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ASB6Q9NWX5 421 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 B3GNT2Q9NY97 397 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ICKQ9UPZ9 632 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 PCDHGB2Q9Y5G2 931 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 PIKFYVEQ9Y2I7 2098 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 FOCADQ5VW36 1801 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 POM121CA8CG34 1229 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 SULT1B1O43704 296 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 PRAMEF4O60810 478 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 SPDEFO95238 335 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 OPRD1P41143 372 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 SIRPAP78324 504 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 CD300CQ08708 224 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 POU4F3Q15319 338 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 PRAMEF9Q5VWM5 478 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 FAHD1Q6P587 224 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ZNF836Q6ZNA1 936 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 NANOGP1Q8N7R0 232 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 FGF14Q92915 247 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 TMEM106AQ96A25 262 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ORAI1Q96D31 301 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 MYADMQ96S97 322 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 ULBP3Q9BZM4 244 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 KIR3DX1Q9H7L2 352 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 FBXO8Q9NRD0 319 aa10.84□□□□□ -0.67
SYNPO-204ENST00000519664 A0A0G2JMP0 313 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 MAN2B1O00754 1011 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 GMDSO60547 372 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SLC22A5O76082 557 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TRAPPC2P0DI81 140 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TRAPPC2BP0DI82 140 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF43P17038 809 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SRP9P49458 86 aaKnown RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 DPTQ07507 201 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 FAPQ12884 760 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 COL28A1Q2UY09 1125 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 APOOLQ6UXV4 268 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TMEM99Q8N816 258 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 OR4M2Q8NGB6 313 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 C6orf106Q9H6K1 298 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 NIPAL2Q9H841 368 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 COL11A1P12107 1806 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 A0A1B0GV50 99 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SYT7O43581 403 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 IFNA21P01568 189 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 PNMTP11086 282 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 CCR6P51684 374 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 RAE1P78406 368 aaKnown RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 POU3F1Q03052 451 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SFXN4Q6P4A7 337 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SPRED2Q7Z698 418 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 LGALS14Q8TCE9 139 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TSSK2Q96PF2 358 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 OR10A5Q9H207 317 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TP53I11O14683 189 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 RAB3DO95716 219 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 IL33O95760 270 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 PRKAR1BP31321 381 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 UGT2B10P36537 528 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 EMP2P54851 167 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 GLO1Q04760 184 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 KCNAB1Q14722 419 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TCTN1Q2MV58 587 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 ZFPM2Q8WW38 1151 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SENP5Q96HI0 755 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TEAD3Q99594 435 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 RBFOX1Q9NWB1 397 aaKnown RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 SLC39A1Q9NY26 324 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 TESQ9UGI8 421 aaKnown RBP10.83□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF337Q9Y3M9 751 aa10.83□□□□□ -0.68
SYNPO-204ENST00000519664 UPK1AO00322 258 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF264O43296 627 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 HRO43593 1189 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 PRSS23O95084 383 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 LILRA6Q6PI73 481 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 TMEM205Q6UW68 189 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 LSMEM1Q8N8F7 131 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 OR13C5Q8NGS8 318 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 TSNAXQ99598 290 aaKnown RBP10.82□□□□□ -0.68
SYNPO-204ENST00000519664 ZNF700Q9H0M5 742 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 FBRSQ9HAH7 460 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 NOX4Q9NPH5 578 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 TMPRSS11EQ9UL52 423 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 IGHV3-20A0A0C4DH32 117 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 SYT5O00445 386 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 HSPA12AO43301 675 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 JMJD7P0C870 316 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 ST6GAL1P15907 406 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 PVALBP20472 110 aaPredicted RBP10.82□□□□□ -0.68
SYNPO-204ENST00000519664 FPR3P25089 353 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 PTPN6P29350 595 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 FXNQ16595 210 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 C9orf50Q5SZB4 431 aa10.82□□□□□ -0.68
SYNPO-204ENST00000519664 C19orf47Q8N9M1 422 aaKnown RBP10.82□□□□□ -0.68
SYNPO-204ENST00000519664 OR4M1Q8NGD0 313 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms