RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SLC16A1P53985 500 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 ST3GAL3Q11203 375 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 BNIP1Q12981 228 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 MTX3Q5HYI7 312 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 FAM69AQ5T7M9 428 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 SP5Q6BEB4 398 aaPredicted RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 ABLIM2Q6H8Q1 611 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 TTC33Q6PID6 262 aaPredicted RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 GDF7Q7Z4P5 450 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 BTLAQ7Z6A9 289 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 RNASE6Q93091 150 aaKnown RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 PRRC1Q96M27 445 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 HS6ST2Q96MM7 605 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 BTBD10Q9BSF8 475 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 SF3B5Q9BWJ5 86 aaKnown RBP12.72□□□□□ -0.37
NUP54-216ENST00000514901 SLC24A3Q9HC58 644 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 FANCFQ9NPI8 374 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 ACTR3BQ9P1U1 418 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 SLC7A7Q9UM01 511 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 PROCRQ9UNN8 238 aa12.72□□□□□ -0.37
NUP54-216ENST00000514901 IGKV1D-42A0A075B6H8 117 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 IGKV3D-15A0A087WSY6 115 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 HTR3EA5X5Y0 456 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 AQP7P3A6NL99 342 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 A8MXE2 369 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 ARPC2O15144 300 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 FZD7O75084 574 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 LYPD3O95274 346 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 STAMBPO95630 424 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 CGAP01215 116 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 GTF2E2P29084 291 aaKnown RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 AGTR1P30556 359 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 MSX2P35548 267 aaPredicted RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 RBM34P42696 430 aaKnown RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 RPS5P46782 204 aaKnown RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 SIRPAP78324 504 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 PIN1Q13526 163 aaPredicted RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 TRIM25Q14258 630 aaKnown RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 VWA1Q6PCB0 445 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 STK32CQ86UX6 486 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 CYP4Z1Q86W10 505 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 KIF18BQ86Y91 864 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 TUSC5Q8IXB3 177 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 TAAR8Q969N4 342 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 KTI12Q96EK9 354 aaPredicted RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 PYURFQ96I23 114 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 SPOCK3Q9BQ16 436 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 PSD2Q9BQI7 771 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 THTPAQ9BU02 230 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 PTDSS2Q9BVG9 487 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 AMBRA1Q9C0C7 1298 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 CLEC4AQ9UMR7 237 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 FAM32AQ9Y421 112 aaKnown RBP12.71□□□□□ -0.37
NUP54-216ENST00000514901 CORINQ9Y5Q5 1042 aa12.71□□□□□ -0.37
NUP54-216ENST00000514901 FTCDNL1E5RQL4 147 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 SMNDC1O75940 238 aaKnown RBP eCLIP12.7□□□□□ -0.38
NUP54-216ENST00000514901 MT-ATP6P00846 226 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 IGF2P01344 180 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 THY1P04216 161 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ITGA2P17301 1181 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 TRAP1Q12931 704 aaKnown RBP12.7□□□□□ -0.38
NUP54-216ENST00000514901 OTUD3Q5T2D3 398 aaPredicted RBP12.7□□□□□ -0.38
NUP54-216ENST00000514901 TMEM225Q6GV28 225 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 GALNT5Q7Z7M9 940 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 TSPYL5Q86VY4 417 aaPredicted RBP12.7□□□□□ -0.38
NUP54-216ENST00000514901 DHFR2Q86XF0 187 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 CCDC103Q8IW40 242 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 MCUR1Q96AQ8 359 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 SLC25A36Q96CQ1 311 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 SLC7A6OSQ96CW6 309 aaPredicted RBP12.7□□□□□ -0.38
NUP54-216ENST00000514901 DNAJA3Q96EY1 480 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ZNF426Q9BUY5 554 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 FNDC11Q9BVV2 318 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 RBM24Q9BX46 236 aaKnown RBP12.7□□□□□ -0.38
NUP54-216ENST00000514901 KLHL4Q9C0H6 718 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ENKD1Q9H0I2 346 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ELOVL5Q9NYP7 299 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ING1Q9UK53 422 aaPredicted RBP12.7□□□□□ -0.38
NUP54-216ENST00000514901 A4GNTQ9UNA3 340 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 RASD1Q9Y272 281 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 B3GALT5Q9Y2C3 310 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ENPP4Q9Y6X5 453 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 HCFC1P51610 2035 aa12.7□□□□□ -0.38
NUP54-216ENST00000514901 ANKHD1Q8IWZ3 2542 aaKnown RBP12.69□□□□□ -0.38
NUP54-216ENST00000514901 ZNF716A6NP11 495 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 DNAJC8O75937 253 aaPredicted RBP12.69□□□□□ -0.38
NUP54-216ENST00000514901 AKR7A3O95154 331 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 RHCEP18577 417 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 GRNP28799 593 aaKnown RBP12.69□□□□□ -0.38
NUP54-216ENST00000514901 UQCRC1P31930 480 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 SLC17A1Q14916 467 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 WDR88Q6ZMY6 472 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 BEND4Q6ZU67 534 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 H1FNTQ75WM6 255 aaPredicted RBP12.69□□□□□ -0.38
NUP54-216ENST00000514901 LUZP2Q86TE4 346 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 OFCC1Q8IZS5 231 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 C10orf53Q8N6V4 93 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 TMEM99Q8N816 258 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 SCAIQ8N9R8 606 aa12.69□□□□□ -0.38
NUP54-216ENST00000514901 ZNF610Q8N9Z0 462 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms