RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	WDR88	Q6ZMY6	472 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FCRLA	Q7L513	359 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	GTF2IRD2	Q86UP8	949 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	CYP4Z1	Q86W10	505 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	AQP12A	Q8IXF9	295 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	OFCC1	Q8IZS5	231 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SLC43A2	Q8N370	569 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ZNF808	Q8N4W9	903 aa	Predicted RBP	10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	NAXE	Q8NCW5	288 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	MFSD8	Q8NHS3	518 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	RNF128	Q8TEB7	428 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SSC4D	Q8WTU2	575 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ITLN2	Q8WWU7	325 aa	Predicted RBP	10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ASB5	Q8WWX0	329 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ROBO4	Q8WZ75	1007 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	LRGUK	Q96M69	825 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	HS6ST2	Q96MM7	605 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ZNF300	Q96RE9	604 aa	Predicted RBP	10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	EPYC	Q99645	322 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PTDSS2	Q9BVG9	487 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FNDC11	Q9BVV2	318 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SLC19A3	Q9BZV2	496 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	MAGIX	Q9H6Y5	334 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	GP6	Q9HCN6	339 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	IL1RAP	Q9NPH3	570 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	GLRX2	Q9NS18	164 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ZNF629	Q9UEG4	869 aa	Predicted RBP	10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SLC7A8	Q9UHI5	535 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	POMP	Q9Y244	141 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	RNF6	Q9Y252	685 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FAM32A	Q9Y421	112 aa	Known RBP	10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489		V9GYQ6	96 aa		10.64	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SPTAN1	Q13813	2472 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TRAV36DV7	A0A075B6V5	113 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FTCDNL1	E5RQL4	147 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489		J3KTA2	159 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489		J3QL48	77 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SMAD9	O15198	467 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	CYTIP	O60759	359 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	IGF2	P01344	180 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TMIGD3	P0DMS9	266 aa	Predicted RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	CHRNB4	P30926	498 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	RPS5	P46782	204 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	YAP1	P46937	504 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FLOT2	Q14254	428 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TRAM2	Q15035	370 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	RNPS1	Q15287	305 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	GUSBP1	Q15486	140 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	OR7A5	Q15622	319 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FAM69A	Q5T7M9	428 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TTC33	Q6PID6	262 aa	Predicted RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PAQR6	Q6TCH4	344 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PIWIL3	Q7Z3Z3	882 aa	Known RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	MRGPRG	Q86SM5	289 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	LSR	Q86X29	649 aa	Predicted RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	CCDC71	Q8IV32	467 aa	Predicted RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	NKAIN4	Q8IVV8	208 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PIK3C3	Q8NEB9	887 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	LILRB4	Q8NHJ6	448 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TAAR8	Q969N4	342 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SDCCAG3	Q96C92	435 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	KTI12	Q96EK9	354 aa	Predicted RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	DNAJA3	Q96EY1	480 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	NAA11	Q9BSU3	229 aa	Predicted RBP	10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TAPBPL	Q9BX59	468 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ANKRD19P	Q9H560	264 aa		10.63	□□□□□ -0.71
PDLIM5-208	ENST00000504489		A0A1W2PNV4	684 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	HTR3E	A5X5Y0	456 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	hCG_2039718	K7EN88	272 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SS18L1	O75177	396 aa	Predicted RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FABP3	P05413	133 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	UMPS	P11172	480 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	HOXB6	P17509	224 aa	Known RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	OPRM1	P35372	400 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	MAGEA2	P43356	314 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SMCP	P49901	116 aa	Predicted RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	CHRNB3	Q05901	458 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	RASGEF1B	Q0VAM2	473 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FOXF2	Q12947	444 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	MFSD13A	Q14CX5	517 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PDK3	Q15120	406 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	FAM98B	Q52LJ0	330 aa	Known RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PPP4R4	Q6NUP7	873 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	YTHDF3	Q7Z739	585 aa	Known RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	P3H2	Q8IVL5	708 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ZDHHC21	Q8IVQ6	265 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PIGX	Q8TBF5	258 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	TMEM239	Q8WW34	195 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	INTS12	Q96CB8	462 aa	Known RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	GMPPA	Q96IJ6	420 aa	Predicted RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	DHRS1	Q96LJ7	313 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	ZNF347	Q96SE7	839 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SEPHS2	Q99611	448 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	PIP5K1A	Q99755	562 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	SFXN3	Q9BWM7	321 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	NMNAT1	Q9HAN9	279 aa	Predicted RBP	10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	MAN2C1	Q9NTJ4	1040 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	KLHL9	Q9P2J3	617 aa		10.62	□□□□□ -0.71
PDLIM5-208	ENST00000504489	IGKV3D-15	A0A087WSY6	115 aa		10.61	□□□□□ -0.71
PDLIM5-208	ENST00000504489	IGHV3-15	A0A0B4J1V0	119 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms