RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GGTLC2Q14390 218 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MANEAQ5SRI9 462 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 KIRREL2Q6UWL6 708 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SIAH3Q8IW03 269 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SLC43A2Q8N370 569 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CSNK1A1LQ8N752 337 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR51L1Q8NGJ5 315 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SMIM19Q96E16 107 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MED28Q9H204 178 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DPAGT1Q9H3H5 408 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FBRSQ9HAH7 460 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ABRACLQ9P1F3 81 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ENTPD2Q9Y5L3 495 aa14.76□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQ72 361 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MCIDASD6RGH6 385 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RDH16O75452 317 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 UBL3O95164 117 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DHFRP00374 187 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 UCHL1P09936 223 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR2T7P0C7T2 308 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 VSX2P58304 361 aaPredicted RBP14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SRSF5Q13243 272 aaKnown RBP14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 STK11Q15831 433 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 RNASE12Q5GAN4 147 aaKnown RBP14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ESPNLQ6ZVH7 1005 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SYS1Q8N2H4 156 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LRRC17Q8N6Y2 441 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FAM98AQ8NCA5 519 aaKnown RBP14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR2T27Q8NH04 317 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NARFLQ9H6Q4 476 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 C8orf33Q9H7E9 229 aaPredicted RBP14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LIN7BQ9HAP6 207 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SCML1Q9UN30 329 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 IER3IP1Q9Y5U9 82 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NUBP2Q9Y5Y2 271 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 EML5Q05BV3 1969 aa14.75□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 A0A0J9YY10 115 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HRKO00198 91 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FOXS1O43638 330 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SERPINA3P01011 423 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GUSBP08236 651 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HNRNPA2B1P22626 353 aaKnown RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NAA10P41227 235 aaPredicted RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF655Q8N720 491 aaPredicted RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GALNT11Q8NCW6 608 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR51Q1Q8NH59 317 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DDOQ99489 341 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SMAD5Q99717 465 aaKnown RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ORAI3Q9BRQ5 295 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MFRPQ9BY79 579 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZFP64Q9NPA5 681 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HRASLS2Q9NWW9 162 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SLC23A1Q9UHI7 598 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 DTX4Q9Y2E6 619 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LRRN3E7EW58 273 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TGFBR3LH3BV60 316 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 IMPA2O14732 288 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GNB5O14775 395 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NDUFB2O95178 105 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ANKRD34CP0C6C1 535 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GBX2P52951 348 aaPredicted RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SIRPAP78324 504 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ESCO2Q56NI9 601 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TSSK4Q6SA08 328 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZNF767PQ75MW2 155 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 SLC35F2Q8IXU6 374 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TOMM5Q8N4H5 51 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ARHGEF39Q8N4T4 335 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HMGB4Q8WW32 186 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 MRGPRX1Q96LB2 322 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CNN2Q99439 309 aaKnown RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LRRN3Q9H3W5 708 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CPNE7Q9UBL6 633 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 COPS3Q9UNS2 423 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NOSIPQ9Y314 301 aaKnown RBP14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 HEATR5AQ86XA9 2040 aa14.74□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TEX13CA0A0J9YWL9 993 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 NPIPB9F8W1W9 429 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FLRT2O43155 660 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 B3GALNT1O75752 331 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GIFP27352 417 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 UBE2IP63279 158 aaKnown RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FGFBP1Q14512 234 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ULK3Q6PHR2 472 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 UNQ9370/PRO34162Q6UXP9 181 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 POMGNT2Q8NAT1 580 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR9A4Q8NGU2 314 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR14A16Q8NHC5 309 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LHFPL5Q8TAF8 219 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 LRFN5Q96NI6 719 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ZFP3Q96NJ6 502 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 OR14A2Q96R54 314 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 GSDMCQ9BYG8 508 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TPSD1Q9BZJ3 242 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 TCEAL2Q9H3H9 227 aaPredicted RBP14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 FAM60AQ9NP50 221 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 EMC7Q9NPA0 242 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 BRD7Q9NPI1 651 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 ANKRD10Q9NXR5 420 aa14.73□□□□□ -0.05
MSH5-SAPCD1-208ENST00000498473 CAMK2AQ9UQM7 478 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms