RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 WSB2Q9NYS7 404 aaPredicted RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MRTO4Q9UKD2 239 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM86C2PA6NEL3 165 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 J3QLW9 94 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CASC3O15234 703 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OSMP13725 252 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF19P17023 458 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EIF1AXP47813 144 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MEOX2P50222 304 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RAP2BP61225 183 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 HNRNPKP61978 463 aaKnown RBP eCLIP9.95□□□□□ -0.825e-7■■■□□ 16.1
MSH5-SAPCD1-207ENST00000493662 P2RY14Q15391 338 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PRSS53Q2L4Q9 553 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PLBD1Q6P4A8 553 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZER1Q7Z7L7 766 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4D10Q8NGI6 311 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR8D4Q8NGM9 314 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4K13Q8NH42 304 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FAM174AQ8TBP5 190 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 METTL21AQ8WXB1 218 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM43Q9BTV4 400 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 EXO5Q9H790 373 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 UFSP2Q9NUQ7 469 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC6A14Q9UN76 642 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 AP1M2Q9Y6Q5 423 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TCF20Q9UGU0 1960 aaKnown RBP9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PATJQ8NI35 1801 aa9.95□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GXYLT2A0PJZ3 443 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RAD1O60671 282 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RNH1P13489 461 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 S100A11P31949 105 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CEBPGP53567 150 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 KCNJ10P78508 379 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TUSC1Q2TAM9 212 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 VWA2Q5GFL6 755 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OAFQ86UD1 273 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LAS2Q8IYD9 372 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DEFB123Q8N688 67 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR1M1Q8NGA1 313 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4M2Q8NGB6 313 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ADAMTS14Q8WXS8 1223 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C7orf34Q96L11 122 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF350Q9GZX5 532 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MDC1Q14676 2089 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FLRT2O43155 660 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ICAM2P13598 275 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NR0B1P51843 470 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZP2Q05996 745 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RUNX2Q13950 521 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 DUSP5Q16690 384 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 TMEM44Q2T9K0 475 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GAB4Q2WGN9 574 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PDSS1Q5T2R2 415 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GLRX5Q86SX6 157 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NKAIN4Q8IVV8 208 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SLC30A8Q8IWU4 369 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C9orf62Q8N4C0 152 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ARL14Q8N4G2 192 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OR4N2Q8NGD1 307 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SUN3Q8TAQ9 357 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SCARB1Q8WTV0 552 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C1GALT1Q9NS00 363 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FBXO34Q9NWN3 711 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RASD1Q9Y272 281 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NOP16Q9Y3C1 178 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FNDC1Q4ZHG4 1894 aaPredicted RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 A0A0J9YY10 115 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZC3H12DA2A288 527 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELOA3DA6NLF2 546 aaPredicted RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 D6RAR5 112 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PRAF2O60831 178 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ADAP00813 363 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZNF35P13682 527 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PPP3CBP16298 524 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 NAGAP17050 411 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ACVR1BP36896 505 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 RBM34P42696 430 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GFOD2Q3B7J2 385 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELOA3BQ3SY89 546 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 PAQR6Q6TCH4 344 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LRRC28Q86X40 367 aaPredicted RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 BEST3Q8N1M1 668 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 GTPBP8Q8N3Z3 284 aaPredicted RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELOA3Q8NG57 546 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SNX33Q8WV41 574 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ELP4Q96EB1 424 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 S100A13Q99584 98 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ACTRT3Q9BYD9 372 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SRA1Q9HD15 236 aaKnown RBP9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 OBP2AQ9NY56 170 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CALML5Q9NZT1 146 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 FBXL3Q9UKT7 428 aa9.94□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 C5orf51A6NDU8 294 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 MAN2B1O00754 1011 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 LILRB5O75023 590 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ITGA10O75578 1167 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 ARL6IP5O75915 188 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 SNAPINO95295 136 aa9.93□□□□□ -0.82
MSH5-SAPCD1-207ENST00000493662 CHRM4P08173 479 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms