RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 MUC13Q9H3R2 512 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 TAS2R10Q9NYW0 307 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 ABCD2Q9UBJ2 740 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 PACSIN3Q9UKS6 424 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 SAMD4AQ9UPU9 718 aaKnown RBP7.84□□□□□ -1.15
USP4-213ENST00000488520 C15orf41Q9Y2V0 281 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 SH3GLB1Q9Y371 365 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 MRPS18CQ9Y3D5 142 aaKnown RBP7.84□□□□□ -1.15
USP4-213ENST00000488520 SNX13Q9Y5W8 968 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 U3KQE9 123 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 MXRA5Q9NR99 2828 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 ATRQ13535 2644 aa7.84□□□□□ -1.15
USP4-213ENST00000488520 FREM1Q5H8C1 2179 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 SH3D21A4FU49 640 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 NPIPB9F8W1W9 429 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 CASKO14936 926 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 SMPD2O60906 423 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 MFN2O95140 757 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 SERPINA1P01009 418 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 OPN1SWP03999 348 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 FESP07332 822 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 TMIGD3P0DMS9 266 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 NCK1P16333 377 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 BMP7P18075 431 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 GGT1P19440 569 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 FKBP2P26885 142 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 OPRM1P35372 400 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 MSX2P35548 267 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 CPOXP36551 454 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 PTGDSP41222 190 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 EIF1P41567 113 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 HTR3AP46098 478 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 KCNJ5P48544 419 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 IDH2P48735 452 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 GAS1P54826 345 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 SUMO3P55854 103 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 RGS8P57771 180 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 PPP2R2BQ00005 443 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 ZNF117Q03924 483 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 TRAP1Q12931 704 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 FOXF2Q12947 444 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 SF3B4Q15427 424 aaKnown RBP eCLIP7.83□□□□□ -1.16
USP4-213ENST00000488520 CYBRD1Q53TN4 286 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 MRPL2Q5T653 305 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 RNF220Q5VTB9 566 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 RAET1LQ5VY80 246 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 NSUN5P2Q63ZY6 315 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 DHRS4L2Q6PKH6 230 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 ENPP6Q6UWR7 440 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 ZNF836Q6ZNA1 936 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 GRAMD2AQ8IUY3 354 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 PM20D2Q8IYS1 436 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 C10orf111Q8N326 155 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 C9orf106Q8NAJ2 232 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 OR2M3Q8NG83 312 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 OR52E4Q8NGH9 312 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 CNOT9Q92600 299 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 SLC35B4Q969S0 331 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 ZBTB8AQ96BR9 441 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 SLC7A6OSQ96CW6 309 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 PERPQ96FX8 193 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 COX4I2Q96KJ9 171 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 RAB3IPQ96QF0 476 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 UGT2B28Q9BY64 529 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 TRIM2Q9C040 744 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 WNT10AQ9GZT5 417 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 GORASP2Q9H8Y8 452 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 EXOSC3Q9NQT5 275 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 RLIMQ9NVW2 624 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 GALNT8Q9NY28 637 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 C6orf203Q9P0P8 240 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 CD300AQ9UGN4 299 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 VDAC3Q9Y277 283 aa7.83□□□□□ -1.16
USP4-213ENST00000488520 FAM32AQ9Y421 112 aaKnown RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 SPIN1Q9Y657 262 aaPredicted RBP7.83□□□□□ -1.16
USP4-213ENST00000488520 HEATR1Q9H583 2144 aaKnown RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 DSPPQ9NZW4 1301 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 CUBNO60494 3623 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 IGLV3-32A0A0A0MS00 114 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 CDHR4A6H8M9 788 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 MBD3L4A6NDZ8 208 aaPredicted RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 MBD3L3A6NE82 208 aaPredicted RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 TRIM64A6NGJ6 449 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 TRIM64BA6NI03 449 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 MBD3L5A6NJ08 208 aaPredicted RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 CLDN24A6NM45 220 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 GJE1A6NN92 205 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 LGI1O95970 557 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 HPNP05981 417 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 GKN3PP0CG01 181 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 ITGA2P17301 1181 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 CD247P20963 164 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 RPS4Y1P22090 263 aaKnown RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 TCEA1P23193 301 aaKnown RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 CXCR1P25024 350 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 APOBEC1P41238 236 aaKnown RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 PCBP3P57721 371 aaKnown RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 EEF1A1P68104 462 aaKnown RBP7.82□□□□□ -1.16
USP4-213ENST00000488520 SORDQ00796 357 aa7.82□□□□□ -1.16
USP4-213ENST00000488520 CEACAM7Q14002 265 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms