RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TSNARE1Q96NA8 513 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 CCNL2Q96S94 520 aaPredicted RBP1.34□□□□□ -2.19
SMC4-220ENST00000488017 RASL11BQ9BPW5 248 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 SLC35A5Q9BS91 424 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 TPPP3Q9BW30 176 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 SMYD3Q9H7B4 428 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 RAB18Q9NP72 206 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 AATFQ9NY61 560 aaKnown RBP eCLIP1.34□□□□□ -2.19
SMC4-220ENST00000488017 HOXC10Q9NYD6 342 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 STAP1Q9ULZ2 295 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 NPIPA1Q9UND3 350 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 ASF1AQ9Y294 204 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 MEMO1Q9Y316 297 aa1.34□□□□□ -2.19
SMC4-220ENST00000488017 AK6Q9Y3D8 172 aaKnown RBP1.34□□□□□ -2.19
SMC4-220ENST00000488017 A0A1W2PNV4 684 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 BTN3A3O00478 584 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 PRRG1O14668 218 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 MBTPS2O43462 519 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 CXCL13O43927 109 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 PEX11AO75192 247 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ADCY5O95622 1261 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 STAMBPO95630 424 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 MOSP00540 346 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 OPN1MWP04001 364 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 P04436 131 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 HEXBP07686 556 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 PLEKP08567 350 aaPredicted RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 OPN1MW2P0DN77 364 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 OPN1MW3P0DN78 364 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 HSPA5P11021 654 aaKnown RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 NPR2P20594 1047 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 HNF1AP20823 631 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 CXCR2P25025 360 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ANXA13P27216 316 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 CHI3L1P36222 383 aaPredicted RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 PTGDSP41222 190 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 RPS9P46781 194 aaKnown RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 SELENOTP62341 195 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ACTA1P68133 377 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ZNF763Q0D2J5 394 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 KLHL30Q0D2K2 578 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ELP6Q0PNE2 266 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 MADCAM1Q13477 382 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 C1orf61Q13536 156 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 GRB7Q14451 532 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 TATDN3Q17R31 274 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 SLC36A3Q495N2 470 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 BCL7AQ4VC05 210 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 RIPPLY2Q5TAB7 128 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 TMIGD1Q6UXZ0 262 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 SYT10Q6XYQ8 523 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 PRSS41Q7RTY9 318 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ABHD12BQ7Z5M8 362 aaPredicted RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 MOB3BQ86TA1 216 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 TMEM123Q8N131 208 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 FTMTQ8N4E7 242 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 DHRSXQ8N5I4 330 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 OR4K14Q8NGD5 310 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 OR4D5Q8NGN0 318 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 SLC22A8Q8TCC7 542 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 BRSK1Q8TDC3 778 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 MRPS31Q92665 395 aaKnown RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 TBC1D31Q96DN5 1066 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ZNF578Q96N58 590 aaPredicted RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 KCNA7Q96RP8 456 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 SECISBP2Q96T21 854 aaKnown RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 OMDQ99983 421 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 NIPSNAP3BQ9BS92 247 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 ALG12Q9BV10 488 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 GPR61Q9BZJ8 451 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 PLA2G2FQ9BZM2 168 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 RAB33BQ9H082 229 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 TPK1Q9H3S4 243 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 POPDC2Q9HBU9 364 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 LHX9Q9NQ69 397 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 FARSBQ9NSD9 589 aaKnown RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 RBAKQ9NYW8 714 aaPredicted RBP1.33□□□□□ -2.2
SMC4-220ENST00000488017 TBK1Q9UHD2 729 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 TRAF3IP3Q9Y228 551 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 RASD1Q9Y272 281 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 KIF3AQ9Y496 699 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 V9GY05 133 aa1.33□□□□□ -2.2
SMC4-220ENST00000488017 IGHV3OR16-13A0A075B7E8 117 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 IGHV1OR21-1A0A087WYE8 117 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 TRDCB7Z8K6 153 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 RGS16O15492 202 aaPredicted RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 TAPBPO15533 448 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 TPST2O60704 377 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 PFKFB2O60825 505 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 IDH1O75874 414 aaKnown RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 KIAA0754O94854 1291 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 LGALS2P05162 132 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 UGT2B4P06133 528 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 GIPP09681 153 aaPredicted RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 IQCF3P0C7M6 154 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 CHTF8P0CG12 524 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 PNMA6AP0CW24 399 aaPredicted RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 RPA2P15927 270 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 GCAP28676 217 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 YWHABP31946 246 aaKnown RBP1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms