RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NICN1Q9BSH3 213 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SIAEQ9HAT2 523 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 CLDN12P56749 244 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 TNK1Q13470 666 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ERV3-1Q14264 604 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 BATFQ16520 125 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 LRRC26Q2I0M4 334 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 ADAMTSL4Q6UY14 1074 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 OR52N1Q8NH53 320 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 UBE2FQ969M7 185 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 SLC22A12Q96S37 553 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 NXF5Q9H1B4 397 aaKnown RBP15.28■□□□□ 0.04
COL7A1-210ENST00000487017 R3HDMLQ9H3Y0 253 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 CLEC2DQ9UHP7 191 aa15.28■□□□□ 0.04
COL7A1-210ENST00000487017 AKAP11Q9UKA4 1901 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-210ENST00000487017 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-210ENST00000487017 TMEM72A0PK05 275 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 IGHG1P01857 330 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 CD6P30203 668 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 RPL34P49207 117 aaKnown RBP15.27■□□□□ 0.04
COL7A1-210ENST00000487017 POU3F1Q03052 451 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-210ENST00000487017 PRICKLE2Q7Z3G6 844 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 OR6T1Q8NGN1 323 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 OR6F1Q8NGZ6 308 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 SDSLQ96GA7 329 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 TAAR2Q9P1P5 351 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 SSX4O60224 188 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 TCRBP04435 133 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 CLDN6P56747 220 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 PEA15Q15121 130 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 Q499Y3 187 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 FAM111BQ6SJ93 734 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 COX15Q7KZN9 410 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 OR9K2Q8NGE7 335 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 GCDHQ92947 438 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-210ENST00000487017 SLCO4A1Q96BD0 722 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 CDH20Q9HBT6 801 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 GLTPQ9NZD2 209 aa15.27■□□□□ 0.04
COL7A1-210ENST00000487017 TSPAN11A1L157 253 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 ANKRD33BA6NCL7 494 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 POM121CA8CG34 1229 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 GFRA2O00451 464 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 LAMTOR5O43504 91 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 NPPBP16860 134 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 ETV6P41212 452 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 SLC35A2P78381 396 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 GAB1Q13480 694 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 BCL2A1Q16548 175 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 BEX5Q5H9J7 111 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 SHISA6Q6ZSJ9 500 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 PRKRAO75569 313 aaKnown RBP15.27■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF28P17035 718 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 PKLRP30613 574 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 TOE1Q96GM8 510 aaKnown RBP15.27■□□□□ 0.03
COL7A1-210ENST00000487017 NIPAL2Q9H841 368 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF593O00488 134 aaPredicted RBP15.27■□□□□ 0.03
COL7A1-210ENST00000487017 CD79AP11912 226 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 GNB3P16520 340 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 RAB6AP20340 208 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 SERPINA2P20848 420 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 LPAL2Q16609 132 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 SMIM3Q9BZL3 60 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 GABARAPL1Q9H0R8 117 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 CAMK2AQ9UQM7 478 aa15.27■□□□□ 0.03
COL7A1-210ENST00000487017 DPM1O60762 260 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 NIPAL3Q6P499 406 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 AHDC1Q5TGY3 1603 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CDC14CA4D256 554 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 SERINC4A6NH21 518 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 NFYAP23511 347 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 TRIM23P36406 574 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CRMP1Q14194 572 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CTU2Q2VPK5 515 aaKnown RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CCSMST1Q4G0I0 132 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 ALKAL2Q6UX46 152 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 TMEFF1Q8IYR6 380 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 NANOGP1Q8N7R0 232 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 FRZBQ92765 325 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CCNL2Q96S94 520 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 ACKR4Q9NPB9 350 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 B3GNT2Q9NY97 397 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 EHFQ9NZC4 300 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CCL26Q9Y258 94 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 PIPP12273 146 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 NKX6-1P78426 367 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 FCN2Q15485 313 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 CLVS2Q5SYC1 327 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 OTUD1Q5VV17 481 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 IDO2Q6ZQW0 420 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 SIAH3Q8IW03 269 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 OR51Q1Q8NH59 317 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 NUDT8Q8WV74 236 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 GALNT9Q9HCQ5 603 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 GCM1Q9NP62 436 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 NOX4Q9NPH5 578 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 RPS19P39019 145 aaKnown RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 GP2P55259 537 aaKnown RBP15.26■□□□□ 0.03
COL7A1-210ENST00000487017 TAS2R46P59540 309 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF169Q14929 603 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms