RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 EMC3Q9P0I2 261 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 ABCD2Q9UBJ2 740 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 FREM1Q5H8C1 2179 aa13.12□□□□□ -0.31
USP4-212ENST00000486549 APCP25054 2843 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 ZNF724A8MTY0 619 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 NDUFAB1O14561 156 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 FMO6PO60774 539 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 NPIPB7O75200 414 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 NCK1P16333 377 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 GTF2E2P29084 291 aaKnown RBP13.11□□□□□ -0.31
USP4-212ENST00000486549 OR1E2P47887 323 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 CDH12P55289 794 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 EGR4Q05215 589 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 PAQR6Q6TCH4 344 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 TFAP2EQ6VUC0 442 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 GALNT5Q7Z7M9 940 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 FITM2Q8N6M3 262 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 SLC38A4Q969I6 547 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 ELOVL5Q9NYP7 299 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 C6orf203Q9P0P8 240 aaPredicted RBP13.11□□□□□ -0.31
USP4-212ENST00000486549 EDARQ9UNE0 448 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 LRBAP50851 2863 aa13.11□□□□□ -0.31
USP4-212ENST00000486549 FBN2P35556 2912 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 IGKV1D-42A0A075B6H8 117 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 A0A087WUJ7 227 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 SH3D21A4FU49 640 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 ZNF682O95780 498 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 CBLP22681 906 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 EDNRAP25101 427 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 CCKARP32238 428 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 UGT2B10P36537 528 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 H3F3AP84243 136 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 SLC25A3Q00325 362 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 PDK3Q15120 406 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 ANKRD34AQ69YU3 496 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 ZNF613Q6PF04 617 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 BEND4Q6ZU67 534 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 GPAT4Q86UL3 456 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 TSPYL5Q86VY4 417 aaPredicted RBP13.1□□□□□ -0.31
USP4-212ENST00000486549 TMEM200AQ86VY9 491 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 ZNF100Q8IYN0 542 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 ADAMTS16Q8TE57 1224 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 FAM222BQ8WU58 562 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 FAM162AQ96A26 154 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 PTDSS2Q9BVG9 487 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 EGFL7Q9UHF1 273 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 PRSS50Q9UI38 385 aa13.1□□□□□ -0.31
USP4-212ENST00000486549 NOSIPQ9Y314 301 aaKnown RBP13.1□□□□□ -0.31
USP4-212ENST00000486549 TRAV36DV7A0A075B6V5 113 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 IGKV3D-15A0A087WSY6 115 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 TRAPPC13A5PLN9 417 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 AQP7P3A6NL99 342 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 C16orf97H3BN30 126 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 GPR171O14626 319 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 CHP2O43745 196 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 SERPINA1P01009 418 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 TCN1P20061 433 aaPredicted RBP13.09□□□□□ -0.31
USP4-212ENST00000486549 OR3A2P47893 321 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 SLC16A1P53985 500 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 TAS2R41P59536 307 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 FOXD4Q12950 439 aaPredicted RBP13.09□□□□□ -0.31
USP4-212ENST00000486549 KRT72Q14CN4 511 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 SWT1Q5T5J6 900 aaKnown RBP13.09□□□□□ -0.31
USP4-212ENST00000486549 TMEM225Q6GV28 225 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 C5orf46Q6UWT4 87 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 CXorf67Q86X51 503 aaPredicted RBP13.09□□□□□ -0.31
USP4-212ENST00000486549 PGAM4Q8N0Y7 254 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 C10orf53Q8N6V4 93 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 FAM156AQ8NDB6 213 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 MFSD8Q8NHS3 518 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 LZICQ8WZA0 190 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 TAAR8Q969N4 342 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 ZC3HAV1LQ96H79 300 aaKnown RBP13.09□□□□□ -0.31
USP4-212ENST00000486549 EPYCQ99645 322 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 MED18Q9BUE0 208 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 FANCFQ9NPI8 374 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 SEC14L4Q9UDX3 406 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 NDRG3Q9UGV2 375 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 SLC7A7Q9UM01 511 aa13.09□□□□□ -0.31
USP4-212ENST00000486549 FTCDNL1E5RQL4 147 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 KPNA4O00629 521 aaPredicted RBP13.08□□□□□ -0.32
USP4-212ENST00000486549 MRPL33O75394 65 aaKnown RBP13.08□□□□□ -0.32
USP4-212ENST00000486549 ADAP00813 363 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 IGHV3-9P01782 118 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 THY1P04216 161 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 EPXP11678 715 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 GGT1P19440 569 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 GRPRP30550 384 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 KRTAP10-9P60411 292 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 SELENOWP63302 87 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 IL1RL1Q01638 556 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 SLC17A1Q14916 467 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 TSC22D1Q15714 1073 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 FAM69AQ5T7M9 428 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 C16orf89Q6UX73 402 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 CASP12Q6UXS9 341 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 STAC2Q6ZMT1 411 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 WDR88Q6ZMY6 472 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 VTCN1Q7Z7D3 282 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 DEFB107AQ8IZN7 70 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms