RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 TAPBPLQ9BX59 468 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 ADAM19Q9H013 955 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 RMND5AQ9H871 391 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 SLC17A5Q9NRA2 495 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 ADPRHL2Q9NX46 363 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 NKIRAS1Q9NYS0 192 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 CALML5Q9NZT1 146 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 DCTN4Q9UJW0 460 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 ZNF443Q9Y2A4 671 aaPredicted RBP13.38□□□□□ -0.27
LIMS3-203ENST00000480744 AMDHD2Q9Y303 409 aa13.38□□□□□ -0.27
LIMS3-203ENST00000480744 TMEM247A6NEH6 219 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 LIPT2A6NK58 231 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 PDLIM1O00151 329 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 KRT33AO76009 404 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 MVDP53602 400 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 SLC25A3Q00325 362 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 LARS2Q15031 903 aaKnown RBP13.37□□□□□ -0.27
LIMS3-203ENST00000480744 C6orf10Q5SRN2 563 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 WBP2NLQ6ICG8 309 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 KLHL24Q6TFL4 600 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 DNM1P46Q6ZS02 220 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 C1orf162Q8NEQ5 155 aaPredicted RBP13.37□□□□□ -0.27
LIMS3-203ENST00000480744 OR9K2Q8NGE7 335 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 AURKBQ96GD4 344 aaPredicted RBP13.37□□□□□ -0.27
LIMS3-203ENST00000480744 ITCHQ96J02 903 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 ZNF385AQ96PM9 386 aaKnown RBP13.37□□□□□ -0.27
LIMS3-203ENST00000480744 MANSC1Q9H8J5 431 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 TPT1P8Q9HAU6 139 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 YLPM1P49750 1951 aaKnown RBP13.37□□□□□ -0.27
LIMS3-203ENST00000480744 DSPPQ9NZW4 1301 aa13.37□□□□□ -0.27
LIMS3-203ENST00000480744 IGHV4-30-2A0A087WSY4 118 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 FAM234BA2RU67 622 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 AQP7P3A6NL99 342 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 CD5LO43866 347 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 TFPTP0C1Z6 253 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 PRG2P13727 222 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 MPGP29372 298 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 ACAA2P42765 397 aaKnown RBP13.36□□□□□ -0.27
LIMS3-203ENST00000480744 RAB35Q15286 201 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 TMEM225Q6GV28 225 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 C11orf71Q6IPW1 123 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 CLEC2AQ6UVW9 174 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 CLIP4Q8N3C7 705 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 C17orf78Q8N4C9 275 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 OR9I1Q8NGQ6 314 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 SLC38A5Q8WUX1 472 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 VPS33AQ96AX1 596 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 TMEM45BQ96B21 275 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 TMEM19Q96HH6 336 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 OR52B2Q96RD2 323 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 SF3B5Q9BWJ5 86 aaKnown RBP13.36□□□□□ -0.27
LIMS3-203ENST00000480744 AMBRA1Q9C0C7 1298 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 FKRPQ9H9S5 495 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 ZIM2Q9NZV7 527 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 ZNF232Q9UNY5 417 aa13.36□□□□□ -0.27
LIMS3-203ENST00000480744 ANK3Q12955 4377 aaKnown RBP13.36□□□□□ -0.27
LIMS3-203ENST00000480744 ARFGEF3Q5TH69 2177 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 A8MVM7 634 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 ATP6V1G2-DDX39BF2Z307 99 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 KLF11O14901 512 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 UBDO15205 165 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 WNT11O96014 354 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 ZCCHC18P0CG32 403 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 POLR2JP52435 117 aaKnown RBP13.35□□□□□ -0.27
LIMS3-203ENST00000480744 PRPS1P60891 318 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 HIKESHIQ53FT3 197 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 RNF220Q5VTB9 566 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 C1orf140Q5VVS0 124 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 ZNF544Q6NX49 715 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 MAVSQ7Z434 540 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 SERPINA11Q86U17 422 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 MIER2Q8N344 545 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 ZIC4Q8N9L1 334 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 POMGNT2Q8NAT1 580 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 MAELQ96JY0 434 aaKnown RBP13.35□□□□□ -0.27
LIMS3-203ENST00000480744 SPATA9Q9BWV2 254 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 ARMC7Q9H6L4 198 aa13.35□□□□□ -0.27
LIMS3-203ENST00000480744 SDR39U1Q9NRG7 319 aaPredicted RBP13.35□□□□□ -0.27
LIMS3-203ENST00000480744 A0A0G2JPF8 293 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 HMGB1P1B2RPK0 211 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-203ENST00000480744 HNRNPCL2B2RXH8 293 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 HNRNPCL3B7ZW38 293 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 FRS3O43559 492 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 TLX2O43763 284 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-203ENST00000480744 GPRIN2O60269 458 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 HNRNPCL1O60812 293 aaKnown RBP13.34□□□□□ -0.27
LIMS3-203ENST00000480744 HNRNPCL4P0DMR1 293 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 CHRNB3Q05901 458 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 LGALS3BPQ08380 585 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 ZNF311Q5JNZ3 666 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 PRAMEF8Q5VWM4 474 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 PRAMEF7Q5VXH5 474 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 MSANTD1Q6ZTZ1 278 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 ABHD12BQ7Z5M8 362 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-203ENST00000480744 ZNF525Q8N782 197 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 THUMPD1Q9NXG2 353 aaKnown RBP13.34□□□□□ -0.27
LIMS3-203ENST00000480744 MOKQ9UQ07 419 aa13.34□□□□□ -0.27
LIMS3-203ENST00000480744 C5orf58C9J3I9 102 aa13.33□□□□□ -0.28
LIMS3-203ENST00000480744 ZNF587BE7ETH6 402 aa13.33□□□□□ -0.28
LIMS3-203ENST00000480744 AHSA1O95433 338 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms