RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	DHRS4L2	Q6PKH6	230 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	C20orf204	Q6ZNR8	217 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	AAED1	Q7RTV5	226 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	TMEM99	Q8N816	258 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	PCYOX1L	Q8NBM8	494 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	OR52N5	Q8NH56	324 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	VANGL1	Q8TAA9	524 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	STK35	Q8TDR2	534 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	TMEM171	Q8WVE6	324 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	DNAJA4	Q8WW22	397 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	SLC38A4	Q969I6	547 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	SLC35B4	Q969S0	331 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	C3orf49	Q96BT1	292 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	SLC47A1	Q96FL8	570 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	HS3ST6	Q96QI5	342 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	IKZF5	Q9H5V7	419 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	BEX4	Q9NWD9	120 aa	Predicted RBP	10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	ZNF446	Q9NWS9	450 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	GID8	Q9NWU2	228 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	TAS2R16	Q9NYV7	291 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	POU2F3	Q9UKI9	436 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	RNF115	Q9Y4L5	304 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	CAPN7	Q9Y6W3	813 aa		10.2	□□□□□ -0.78
CPNE1-222	ENST00000473373	RAI1	Q7Z5J4	1906 aa	Predicted RBP	10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	IGKV3D-15	A0A087WSY6	115 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	LOC100653049	A0A140TA62	436 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	LIPT2	A6NK58	231 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	ZNF716	A6NP11	495 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	BBIP1	A8MTZ0	92 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	ZNF814	B7Z6K7	855 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	SIAH2	O43255	324 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	RAMP1	O60894	148 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	KRT34	O76011	436 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	CNOT4	O95628	575 aa	Known RBP	10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	ZNF43	P17038	809 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	PTN	P21246	168 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	IGHV1-2	P23083	117 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	SLC16A1	P53985	500 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	TGFBR3	Q03167	851 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	KLF10	Q13118	480 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	SELPLG	Q14242	412 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	REP15	Q6BDI9	236 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	ULK3	Q6PHR2	472 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	KLHL17	Q6TDP4	642 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	C5orf46	Q6UWT4	87 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	DLEU7	Q6UYE1	221 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	PATL1	Q86TB9	770 aa	Known RBP	10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	LSR	Q86X29	649 aa	Predicted RBP	10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	SNX32	Q86XE0	403 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	C10orf111	Q8N326	155 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	DPP10	Q8N608	796 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	OR9K2	Q8NGE7	335 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	AKAP1	Q92667	903 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	PERP	Q96FX8	193 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	EPYC	Q99645	322 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	GSX1	Q9H4S2	264 aa	Predicted RBP	10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	EVA1A	Q9H8M9	152 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	SLC52A3	Q9NQ40	469 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	FLVCR1	Q9Y5Y0	555 aa		10.19	□□□□□ -0.78
CPNE1-222	ENST00000473373	TRBV5-3	A0A0A0MS03	114 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373		A0A1B0GWA3	101 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373		A0A1W2PPR1	153 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373		A0A1W2PR80	420 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	AQP7P3	A6NL99	342 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	CPSF4L	A6NMK7	179 aa	Known RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373		M0QX08	132 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373		M0R3H8	397 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	AIM2	O14862	343 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	AKAP8	O43823	692 aa	Known RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	OR2T1	O43869	369 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	TPST1	O60507	370 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	VAMP5	O95183	116 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	CD53	P19397	219 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	MDH1	P40925	334 aa	Known RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	NKX6-1	P78426	367 aa	Predicted RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	OR1Q1	Q15612	314 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	GLIPR1L2	Q4G1C9	344 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	TIMM23B	Q5SRD1	257 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	OR7E24	Q6IFN5	339 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	ADAM5	Q6NVV9	412 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	NIPAL3	Q6P499	406 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	C22orf34	Q6ZV56	151 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	SSX8	Q7RTT4	187 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	ATG4D	Q86TL0	474 aa	Predicted RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	RETREG3	Q86VR2	466 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	TGIF2LY	Q8IUE0	185 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	DEPDC4	Q8N2C3	294 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	ZNF433	Q8N7K0	673 aa	Predicted RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	MFSD8	Q8NHS3	518 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	RASSF5	Q8WWW0	418 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	PROX1	Q92786	737 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	FBXW5	Q969U6	566 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	GTPBP3	Q969Y2	492 aa	Known RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	LRRC58	Q96CX6	371 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	MBD6	Q96DN6	1003 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	MCHR1	Q99705	422 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	SF3B5	Q9BWJ5	86 aa	Known RBP	10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	PRR14	Q9BWN1	585 aa		10.18	□□□□□ -0.78
CPNE1-222	ENST00000473373	ASPN	Q9BXN1	380 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms