RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 EXOC3L2Q2M3D2 409 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 PDSS1Q5T2R2 415 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 OR2T5Q6IEZ7 315 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 B3GNT6Q6ZMB0 384 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 SLC46A3Q7Z3Q1 461 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 TMEM179BQ7Z7N9 219 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 NRMQ8IXM6 262 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 LRRC17Q8N6Y2 441 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 OR4C15Q8NGM1 316 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 OR2T29Q8NH02 315 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 ACOT11Q8WXI4 607 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-209ENST00000469852 CPNE4Q96A23 557 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-209ENST00000469852 SLC25A36Q96CQ1 311 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 ANKRD19PQ9H560 264 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 TRAPPC4Q9Y296 219 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 MYO7BQ6PIF6 2116 aa13.22□□□□□ -0.29
COL9A3-209ENST00000469852 MBD3L4A6NDZ8 208 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-209ENST00000469852 MBD3L3A6NE82 208 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-209ENST00000469852 MBD3L5A6NJ08 208 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CD8B2A6NJW9 211 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 SLC22A20A6NK97 555 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 E9PLN8 166 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CCL21O00585 134 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 AKR7A3O95154 331 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CH25HO95992 272 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 MAKP20794 623 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 GRPRP30550 384 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 IFNA8P32881 189 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 P2RY4P51582 365 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CSNK2A1P68400 391 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-209ENST00000469852 H3F3AP84243 136 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 ZNF74Q16587 644 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 FAM69AQ5T7M9 428 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CHMP1BQ7LBR1 199 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CCDC103Q8IW40 242 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 TMEM99Q8N816 258 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 NAXEQ8NCW5 288 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 MFSD8Q8NHS3 518 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 MBD3L2Q8NHZ7 208 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-209ENST00000469852 HS6ST2Q96MM7 605 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 VKORC1Q9BQB6 163 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 SLC19A3Q9BZV2 496 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 CALHM2Q9HA72 323 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 ARMC1Q9NVT9 282 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 KLHL13Q9P2N7 655 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 ING1Q9UK53 422 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-209ENST00000469852 MED31Q9Y3C7 131 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 ZNF175Q9Y473 711 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 AP4S1Q9Y587 144 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 U3KQV3 271 aa13.21□□□□□ -0.29
COL9A3-209ENST00000469852 SH3PXD2BA1X283 911 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 M0R082 166 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 TNFRSF11BO00300 401 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 SYNGR4O95473 234 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 IFI30P13284 250 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 PTGER4P35408 488 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 AGFG1P52594 562 aaKnown RBP13.2□□□□□ -0.3
COL9A3-209ENST00000469852 CASP6P55212 293 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 SLC35A1P78382 337 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ADORA2A-AS1P86434 159 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 PMPCAQ10713 525 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 C4orf17Q53FE4 359 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 HMBOX1Q6NT76 420 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 C5orf46Q6UWT4 87 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF730Q6ZMV8 503 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 MBOAT2Q6ZWT7 520 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 FCRLAQ7L513 359 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 GCNT2Q8N0V5 402 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 C10orf53Q8N6V4 93 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 OR4K5Q8NGD3 323 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF417Q8TAU3 575 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 RNF128Q8TEB7 428 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ABHD3Q8WU67 409 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 LRTOMTQ8WZ04 291 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 WNT2BQ93097 391 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ALPK1Q96QP1 1244 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ZNF587Q96SQ5 575 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-209ENST00000469852 EPYCQ99645 322 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 GPA33Q99795 319 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 TAPBPLQ9BX59 468 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 NTN4Q9HB63 628 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 TIGARQ9NQ88 270 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 PAQR5Q9NXK6 330 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-209ENST00000469852 ERRFI1Q9UJM3 462 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-209ENST00000469852 MCTS1Q9ULC4 181 aaKnown RBP13.2□□□□□ -0.3
COL9A3-209ENST00000469852 CLEC4AQ9UMR7 237 aa13.2□□□□□ -0.3
COL9A3-209ENST00000469852 NCOA6Q14686 2063 aaPredicted RBP13.2□□□□□ -0.3
COL9A3-209ENST00000469852 A0A0G2JNJ9 132 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 OR2T1O43869 369 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 OR7A10O76100 309 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 HOXD4P09016 255 aaPredicted RBP13.19□□□□□ -0.3
COL9A3-209ENST00000469852 GPR4P46093 362 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 HMGA2P52926 109 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 CTBP2P56545 445 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 PRKCDQ05655 676 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 FOXF2Q12947 444 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 OTUD3Q5T2D3 398 aaPredicted RBP13.19□□□□□ -0.3
COL9A3-209ENST00000469852 ABLIM2Q6H8Q1 611 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 P4HA3Q7Z4N8 544 aa13.19□□□□□ -0.3
COL9A3-209ENST00000469852 HS3ST5Q8IZT8 346 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms