RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 SEC23BQ15437 767 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 SGCBQ16585 318 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 EXOC3L2Q2M3D2 409 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 C1orf185Q5T7R7 199 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 ZNF585AQ6P3V2 769 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 TMPRSS11FQ6ZWK6 438 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 NRMQ8IXM6 262 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 SLC43A2Q8N370 569 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 PFN4Q8NHR9 129 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 MBD3L2Q8NHZ7 208 aaPredicted RBP13.6□□□□□ -0.23
NPHP4-205ENST00000466897 RNF128Q8TEB7 428 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 WNT2BQ93097 391 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 BPIFA2Q96DR5 249 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 SGTBQ96EQ0 304 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 CENPNQ96H22 339 aaPredicted RBP13.6□□□□□ -0.23
NPHP4-205ENST00000466897 ZNF845Q96IR2 970 aaPredicted RBP13.6□□□□□ -0.23
NPHP4-205ENST00000466897 SRXN1Q9BYN0 137 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 NTN4Q9HB63 628 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 GP6Q9HCN6 339 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 C20orf141Q9NUB4 165 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 B3GALT5Q9Y2C3 310 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 FAM215AQ9Y5M1 114 aa13.6□□□□□ -0.23
NPHP4-205ENST00000466897 SLC22A20A6NK97 555 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 E9PLN8 166 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 KPNA4O00629 521 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ZNHIT1O43257 154 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 OR7A10O76100 309 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 SYNGR4O95473 234 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 TSPAN19P0C672 248 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ASAH2BP0C7U1 165 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ENPP1P22413 925 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 GTF2E2P29084 291 aaKnown RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 TIMP3P35625 211 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 OMPP47874 163 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 OR2B6P58173 313 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ELF3P78545 371 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 LTBQ06643 244 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 MRPL49Q13405 166 aaKnown RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 PON3Q15166 354 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 OR7A5Q15622 319 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 MICAQ29983 383 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ANKDD1AQ495B1 522 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ABLIM2Q6H8Q1 611 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 RTL6Q6ICC9 239 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ZNF770Q6IQ21 691 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 C1orf94Q6P1W5 598 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 SHQ1Q6PI26 577 aaKnown RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 TBPL2Q6SJ96 375 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 B3GNT6Q6ZMB0 384 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 MAMDC2Q7Z304 686 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 SLC46A3Q7Z3Q1 461 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 P3H2Q8IVL5 708 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 CDK20Q8IZL9 346 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 PIGXQ8TBF5 258 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 RELTQ969Z4 430 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ZFP3Q96NJ6 502 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 MOGAT1Q96PD6 335 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 TM9SF2Q99805 663 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 VKORC1Q9BQB6 163 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 NAA11Q9BSU3 229 aaPredicted RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 ASPNQ9BXN1 380 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 RNF122Q9H9V4 155 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 FANCFQ9NPI8 374 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 NANSQ9NR45 359 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 MRPL39Q9NYK5 338 aaKnown RBP13.59□□□□□ -0.23
NPHP4-205ENST00000466897 TINAGQ9UJW2 476 aa13.59□□□□□ -0.23
NPHP4-205ENST00000466897 LOC102725191A0A1B0GVB3 256 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 AQP7P3A6NL99 342 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 SMAD9O15198 467 aaKnown RBP13.58□□□□□ -0.24
NPHP4-205ENST00000466897 KLF4O43474 513 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 PIP5K1CO60331 668 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 CYTIPO60759 359 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 CCNB2O95067 398 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 VAMP5O95183 116 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 CH25HO95992 272 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 IFI30P13284 250 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 SLC9A3P48764 834 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 P2RY4P51582 365 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 ARHGDIAP52565 204 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 NUP107P57740 925 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 LSM11P83369 360 aaKnown RBP eCLIP13.58□□□□□ -0.24
NPHP4-205ENST00000466897 PDK3Q15120 406 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 RNPS1Q15287 305 aaKnown RBP13.58□□□□□ -0.24
NPHP4-205ENST00000466897 EIF2S3LQ2VIR3 472 aaKnown RBP13.58□□□□□ -0.24
NPHP4-205ENST00000466897 GTF2IRD2BQ6EKJ0 949 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 HMBOX1Q6NT76 420 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 GTF2IRD2Q86UP8 949 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 SVOPLQ8N434 492 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 FNDC9Q8TBE3 224 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 LRTOMTQ8WZ04 291 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 TRIB1Q96RU8 372 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 GLRX2Q9NS18 164 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 U3KQV3 271 aa13.58□□□□□ -0.24
NPHP4-205ENST00000466897 NCOA6Q14686 2063 aaPredicted RBP13.58□□□□□ -0.24
NPHP4-205ENST00000466897 A0A1B0GUH1 482 aa13.57□□□□□ -0.24
NPHP4-205ENST00000466897 A0A1W2PNV4 684 aa13.57□□□□□ -0.24
NPHP4-205ENST00000466897 OR10H3O60404 316 aa13.57□□□□□ -0.24
NPHP4-205ENST00000466897 E2F6O75461 281 aa13.57□□□□□ -0.24
NPHP4-205ENST00000466897 PTNP21246 168 aa13.57□□□□□ -0.24
NPHP4-205ENST00000466897 FPR3P25089 353 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms