RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SFTPDP35247 375 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 POLR2HP52434 150 aaKnown RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 TPD52P55327 224 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 RPS3AP61247 264 aaKnown RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 NCALDP61601 193 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 HOXC5Q00444 222 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 CTU2Q2VPK5 515 aaKnown RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 CYBRD1Q53TN4 286 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 RANBP3LQ86VV4 465 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 GCNT2Q8N0V5 402 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 CADM2Q8N3J6 435 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 RNF148Q8N7C7 305 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC25A43Q8WUT9 341 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 FIG4Q92562 907 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 ADGRG7Q96K78 797 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 AMBRA1Q9C0C7 1298 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 ADAM19Q9H013 955 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 C1orf21Q9H246 121 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 C6orf203Q9P0P8 240 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 CHRNA9Q9UGM1 479 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 CD300AQ9UGN4 299 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 BAG5Q9UL15 447 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 ZNF175Q9Y473 711 aa10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 SPIN1Q9Y657 262 aaPredicted RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 YLPM1P49750 1951 aaKnown RBP10.61□□□□□ -0.71
SQSTM1-206ENST00000466342 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.6□□□□□ -0.714e-12■■■■□ 23.4
SQSTM1-206ENST00000466342 TMED7-TICAM2A0A0A6YYA0 188 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 A0A0J9YW62 118 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 A0A1W2PNV4 684 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TMEM229AB2RXF0 380 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 RNF223E7ERA6 249 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 M0R3H8 397 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TNFSF11O14788 317 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 ADAMDEC1O15204 470 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 SIAH2O43255 324 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TNFSF13O75888 250 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 OPN1LWP04000 364 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TCN1P20061 433 aaPredicted RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 FKBP2P26885 142 aaKnown RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 HTR2AP28223 471 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 MAP2K6P52564 334 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 FXNQ16595 210 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TMEM176BQ3YBM2 270 aaPredicted RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 SYT14P1Q58G82 188 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 PDSS1Q5T2R2 415 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 PLXDC2Q6UX71 529 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 LUZP2Q86TE4 346 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 ADGRG3Q86Y34 549 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 ARHGAP24Q8N264 748 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 LSMEM1Q8N8F7 131 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 FAM156AQ8NDB6 213 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 ATP6V1C2Q8NEY4 427 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 OR52E4Q8NGH9 312 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 OR6T1Q8NGN1 323 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 OR10D3Q8NH80 312 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 LZICQ8WZA0 190 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 PROX1Q92786 737 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 STARD4Q96DR4 205 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 ZNF845Q96IR2 970 aaPredicted RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 WFDC6Q9BQY6 131 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TRIM2Q9C040 744 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 ZNF701Q9NV72 531 aaPredicted RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 PAQR5Q9NXK6 330 aaPredicted RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 GALNT8Q9NY28 637 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TAS2R1Q9NYW7 299 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 EGFL7Q9UHF1 273 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 OSGIN1Q9UJX0 560 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 PRPF19Q9UMS4 504 aaKnown RBP10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC9A8Q9Y2E8 581 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 TMED7Q9Y3B3 224 aa10.6□□□□□ -0.71
SQSTM1-206ENST00000466342 DYSFO75923 2080 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 DEFB108AA8MXU0 73 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 ZNF208O43345 1280 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 TPST2O60704 377 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 FMO6PO60774 539 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 NCK1P16333 377 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 SLC7A1P30825 629 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 EIF1AXP47813 144 aaKnown RBP10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 NR1H2P55055 460 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 SELENOWP63302 87 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 CEACAM7Q14002 265 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 SGCBQ16585 318 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 HBMQ6B0K9 141 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 GLYATQ6IB77 296 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 C6orf89Q6UWU4 347 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 CBLL1Q75N03 491 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 ATG4DQ86TL0 474 aaPredicted RBP10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 OR4D11Q8NGI4 311 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 OR2V1Q8NHB1 315 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 VANGL1Q8TAA9 524 aaPredicted RBP10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 IGFBPL1Q8WX77 278 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 FAM162AQ96A26 154 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 C3orf49Q96BT1 292 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 PIK3IP1Q96FE7 263 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 OR5B2Q96R09 309 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 MCHR1Q99705 422 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 REG4Q9BYZ8 158 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 PCDHAC1Q9H158 963 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 COQ10BQ9H8M1 238 aa10.59□□□□□ -0.71
SQSTM1-206ENST00000466342 RNF122Q9H9V4 155 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms