RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ATP6V1HQ9UI12 483 aa6.46□□□□□ -1.38
USP54-208ENST00000461520 GJE1A6NN92 205 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 TMEM233B4DJY2 109 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 H3BNH8 94 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 TNFSF11O14788 317 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 PIP5K1BO14986 540 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 TRIAP1O43715 76 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 CXCL13O43927 109 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 SYNGR4O95473 234 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 KRT16P08779 473 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 NUDT17P0C025 328 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 LINGO3P0C6S8 592 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 PABPC4LP0CB38 370 aaKnown RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 ATP6V1C1P21283 382 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 LOXP28300 417 aaPredicted RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 ELK4P28324 431 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 SLC6A8P48029 635 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 SUMO3P55854 103 aaPredicted RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 LASP1Q14847 261 aaKnown RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 CD226Q15762 336 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 EXOC3L2Q2M3D2 409 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 ATP6AP1LQ52LC2 224 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 XKR7Q5GH72 579 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 BEX5Q5H9J7 111 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 Q5PR19 223 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 CCNJQ5T5M9 372 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 HBMQ6B0K9 141 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 PPP4R4Q6NUP7 873 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 CDC73Q6P1J9 531 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 CLEC9AQ6UXN8 241 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 STAC2Q6ZMT1 411 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 TRABD2AQ86V40 505 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 FAM90A1Q86YD7 464 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 P3H2Q8IVL5 708 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 GATSQ8NAP1 163 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 ZNF527Q8NB42 609 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 OR7A2PQ8NGA2 310 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 OR2V1Q8NHB1 315 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 B4GALNT2Q8NHY0 566 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 PSMA8Q8TAA3 256 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 FBXO30Q8TB52 745 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 ADAMTS15Q8TE58 950 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 OR5P2Q8WZ92 322 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 DDB2Q92466 427 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 DPF1Q92782 380 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 RFKQ969G6 155 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 MOAP1Q96BY2 351 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 TRIM44Q96DX7 344 aaPredicted RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 CHMP6Q96FZ7 201 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 C16orf58Q96GQ5 468 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 ZC3HAV1LQ96H79 300 aaKnown RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 SH3YL1Q96HL8 342 aaPredicted RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 KLHL15Q96M94 604 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 PRPF18Q99633 342 aaKnown RBP6.45□□□□□ -1.38
USP54-208ENST00000461520 CCL19Q99731 98 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 NPAS1Q99742 590 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 ACTRT3Q9BYD9 372 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 KLHL4Q9C0H6 718 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 OR10A4Q9H209 315 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 UBTD1Q9HAC8 227 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 GPR35Q9HC97 309 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 TIGARQ9NQ88 270 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 RLIMQ9NVW2 624 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 GPR52Q9Y2T5 361 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 MED12Q93074 2177 aa6.45□□□□□ -1.38
USP54-208ENST00000461520 MED12LQ86YW9 2145 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 TLN2Q9Y4G6 2542 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 RTTNQ86VV8 2226 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 A0A0J9YW62 118 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 DNAJC9-AS1A6NH13 148 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 TMCC2O75069 709 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 PEX11AO75192 247 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 SLU7O95391 586 aaKnown RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 OPN1LWP04000 364 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 TUBBP07437 444 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 LAMP1P11279 417 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 EFNA1P20827 205 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 PRPS1L1P21108 318 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CCT3P49368 545 aaKnown RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 P2RX1P51575 399 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 NR1H2P55055 460 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CARD18P57730 90 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 ZNF117Q03924 483 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 MAD2L1Q13257 205 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 PTGR1Q14914 329 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 RNPS1Q15287 305 aaKnown RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 KLHL26Q53HC5 615 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 C6orf136Q5SQH8 315 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 DCST2Q5T1A1 773 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 BHLHB9Q6PI77 547 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 FNDC5Q8NAU1 212 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 SFXN5Q8TD22 340 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 TCP10LQ8TDR4 215 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 RNF128Q8TEB7 428 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 OSTF1Q92882 214 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CDS1Q92903 461 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 CPNE4Q96A23 557 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 COQ8BQ96D53 544 aa6.44□□□□□ -1.38
USP54-208ENST00000461520 OTUB1Q96FW1 271 aaPredicted RBP6.44□□□□□ -1.38
USP54-208ENST00000461520 REXO5Q96IC2 774 aaKnown RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms