RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 OR2B6P58173 313 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 FUT7Q11130 342 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 SERTAD2Q14140 314 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 CLPPQ16740 277 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 DEFB110Q30KQ9 67 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 ALG10BQ5I7T1 473 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 VASNQ6EMK4 673 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 THSD4Q6ZMP0 1018 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 RAB43Q86YS6 212 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 ZFP41Q8N8Y5 198 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 SYT14Q8NB59 555 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 OR4D9Q8NGE8 314 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 ITFG2Q969R8 447 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 KCTD12Q96CX2 325 aaKnown RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 AHCYL2Q96HN2 611 aaKnown RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 SLC38A3Q99624 504 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 SOSTQ9BQB4 213 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 NDC1Q9BTX1 674 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 TMED9Q9BVK6 235 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 MOV10Q9HCE1 1003 aaKnown RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 MKKSQ9NPJ1 570 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 AKAP7Q9P0M2 348 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 IL20RAQ9UHF4 553 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 ICAM5Q9UMF0 924 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 A0A0A6YYC8 382 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 FAM183AA6NL82 134 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 I3L1I5 382 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 HCRTR1O43613 425 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 NDUFB2O95178 105 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 IGF2P01344 180 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 SBK2P0C263 348 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 WT1P19544 449 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 TGM4P49221 684 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 PPM1FP49593 454 aaPredicted RBP13.55□□□□□ -0.24
USP4-203ENST00000415188 CD300CQ08708 224 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 SQSTM1Q13501 440 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 BAK1Q16611 211 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.55□□□□□ -0.24
USP4-203ENST00000415188 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.55□□□□□ -0.24
USP4-203ENST00000415188 LCN1P1Q5VSP4 162 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 OAFQ86UD1 273 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 UBQLNLQ8IYU4 475 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 TMEM99Q8N816 258 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 ZNF614Q8N883 585 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 OR7G1Q8NGA0 311 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 GRHL3Q8TE85 626 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 PTP4A1Q93096 173 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 OTULINQ96BN8 352 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 SGTBQ96EQ0 304 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 WBP1Q96G27 269 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 TEAD3Q99594 435 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 ATF6BQ99941 703 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 HOXD1Q9GZZ0 328 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 HCN3Q9P1Z3 774 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 NOX1Q9Y5S8 564 aa13.55□□□□□ -0.24
USP4-203ENST00000415188 H0YIG0 161 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 PLPP2O43688 288 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 IGKV1D-16P01601 117 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 CSF3P09919 207 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 GABRA4P48169 554 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 RPS7P62081 194 aaKnown RBP13.54□□□□□ -0.24
USP4-203ENST00000415188 GPLD1P80108 840 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 LGALS3BPQ08380 585 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 TRA2AQ13595 282 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP4-203ENST00000415188 SNAP47Q5SQN1 464 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 SLC35F1Q5T1Q4 408 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 TMEM71Q6P5X7 295 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 NPSR1Q6W5P4 371 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 ZNF517Q6ZMY9 492 aaPredicted RBP13.54□□□□□ -0.24
USP4-203ENST00000415188 TMEM91Q6ZNR0 172 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 MED25Q71SY5 747 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 NRARPQ7Z6K4 114 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 TPRA1Q86W33 373 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 DTX1Q86Y01 620 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 POMGNT2Q8NAT1 580 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 OR10H4Q8NGA5 316 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 NACC2Q96BF6 587 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 MRPL48Q96GC5 212 aaKnown RBP13.54□□□□□ -0.24
USP4-203ENST00000415188 PEX11GQ96HA9 241 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 HDHD5Q9BXW7 423 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 SLC19A3Q9BZV2 496 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 RAB33BQ9H082 229 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 ENKD1Q9H0I2 346 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 MCCC2Q9HCC0 563 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 OCIAD1Q9NX40 245 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 PCDHGB7Q9Y5F8 929 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 ZNF462Q96JM2 2506 aa13.54□□□□□ -0.24
USP4-203ENST00000415188 TRAV27A0A087WT01 109 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 FITM1A5D6W6 292 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 TLCD2A6NGC4 264 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 SERINC4A6NH21 518 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 TGFBR3LH3BV60 316 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 ATP6V1G1O75348 118 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 PPP1R3DO95685 299 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 CD1AP06126 327 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 FUT1P19526 365 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 AZGP1P25311 298 aaKnown RBP13.53□□□□□ -0.24
USP4-203ENST00000415188 SSTR4P31391 388 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 RFX2P48378 723 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 EVX1P49640 407 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms