RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TROVE2P10155 538 aaKnown RBP eCLIP5.72□□□□□ -1.49
USP40-202ENST00000409945 NEFHP12036 1026 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 NAGAP17050 411 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 TSPAN8P19075 237 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 NR4A2P43354 598 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 TRPC1P48995 793 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 TMED10P49755 219 aaKnown RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 ENTPD1P49961 510 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 NAGLUP54802 743 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 MLF1P58340 268 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 FOLH1Q04609 750 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 KRTCAP3Q53RY4 240 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 ARMC4Q5T2S8 1044 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 GFRALQ6UXV0 394 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 IQCF2Q8IXL9 164 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 METTL4Q8N3J2 472 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 CATSPER1Q8NEC5 780 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 TCP10LQ8TDR4 215 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 ITFG2Q969R8 447 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 DTNBP1Q96EV8 351 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 TMEM237Q96Q45 408 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 MRPL1Q9BYD6 325 aaKnown RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 KLHL1Q9NR64 748 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 PPIEQ9UNP9 301 aaKnown RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 ENTPD4Q9Y227 616 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 B3GALT5Q9Y2C3 310 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 WBP11Q9Y2W2 641 aaKnown RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 USH1CQ9Y6N9 552 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 A0A1B0GUH1 482 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 hDV102S1A0JD36 115 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 SOCS2O14508 198 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 PCDH7O60245 1069 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 DNAJB6O75190 326 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 BCAS2O75934 225 aaPredicted RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 ATP5HO75947 161 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 TBX6O95947 436 aaPredicted RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 P04436 131 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 SP1P08047 785 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 UROSP10746 265 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 CSNK2A2P19784 350 aaPredicted RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 SERPINB5P36952 375 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 UNC50Q53HI1 259 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 NDUFAF5Q5TEU4 345 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 SLC30A6Q6NXT4 461 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 BTN2A1Q7KYR7 527 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 COMMD6Q7Z4G1 85 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 KIF2BQ8N4N8 673 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 APCDD1LQ8NCL9 501 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 NFAM1Q8NET5 270 aaPredicted RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 OR8H1Q8NGG4 311 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 NR4A3Q92570 626 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 ZNF75CPQ92670 426 aaPredicted RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 METTL2AQ96IZ6 378 aaKnown RBP5.72□□□□□ -1.49
USP40-202ENST00000409945 MAGED4Q96JG8 741 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 AICDAQ9GZX7 198 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 MIEF1Q9NQG6 463 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 RNF7Q9UBF6 113 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 SEC14L3Q9UDX4 400 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 PLLPQ9Y342 182 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 ATG4BQ9Y4P1 393 aa5.72□□□□□ -1.49
USP40-202ENST00000409945 BSNQ9UPA5 3926 aa5.71□□□□□ -1.49
USP40-202ENST00000409945 NBASA2RRP1 2371 aa5.71□□□□□ -1.49
USP40-202ENST00000409945 UBR5O95071 2799 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 IGHV4-28A0A0C4DH34 117 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 M0QZ24 198 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 SLC28A1O00337 649 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 TP53I11O14683 189 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 KLF11O14901 512 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 TFECO14948 347 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 OGG1O15527 345 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 FGF17O60258 216 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 MITFO75030 526 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 EEDO75530 441 aaKnown RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 TGDSO95455 350 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 AIFM1O95831 613 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 GBAP04062 536 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 ZNF24P17028 368 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 NT5EP21589 574 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 GPR143P51810 404 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 XKP51811 444 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 HNRNPFP52597 415 aaKnown RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 EFNA3P52797 238 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PSPHP78330 225 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 IGLV3-21P80748 117 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 PPP2R2BQ00005 443 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PLGLB1Q02325 96 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 BNIP1Q12981 228 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PNLIPRP3Q17RR3 467 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PCGF3Q3KNV8 242 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 PXDC1Q5TGL8 231 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 C18orf63Q68DL7 685 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 SPINK14Q6IE38 97 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 CCBE1Q6UXH8 406 aaPredicted RBP5.71□□□□□ -1.5
USP40-202ENST00000409945 RTL4Q6ZR62 310 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 FAM47EQ6ZV65 393 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 SH2D5Q6ZV89 423 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 GALNTL5Q7Z4T8 443 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 C1QL2Q7Z5L3 287 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 OR4N5Q8IXE1 308 aa5.71□□□□□ -1.5
USP40-202ENST00000409945 RNF175Q8N4F7 328 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms