RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 HLA-DQA2P01906 255 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ZNF45Q02386 682 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ALG10Q5BKT4 473 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 GDPGP1Q6ZNW5 385 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 QSOX2Q6ZRP7 698 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 C17orf47Q8NEP4 570 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 OR5J2Q8NH18 312 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ITFG2Q969R8 447 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 OR11A1Q9GZK7 315 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 GALNT9Q9HCQ5 603 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 TRIM36Q9NQ86 728 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 SACM1LQ9NTJ5 587 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 OCIAD1Q9NX40 245 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 B3GNT3Q9Y2A9 372 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ZNF337Q9Y3M9 751 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 SHISA3A0PJX4 238 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 FAM25AB3EWG3 89 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 FAM25CB3EWG5 89 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 FAM25GB3EWG6 89 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 GPANK1O95872 356 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 MT-ND5P03915 603 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 IGKV3-11P04433 115 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 SHC1P29353 583 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 FBXW4P57775 412 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 SKP2Q13309 424 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.16□□□□□ -0.78
TCOF1-203ENST00000394269 TRIM61Q5EBN2 209 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 NANOGNBQ7Z5D8 188 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 CEACAM19Q7Z692 300 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ADIPOR1Q96A54 375 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 SLC25A46Q96AG3 418 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 MVB12AQ96EY5 273 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 CCDC74BQ96LY2 380 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 MROQ9BYG7 248 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 RAB33BQ9H082 229 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 MRPS18AQ9NVS2 196 aaKnown RBP10.16□□□□□ -0.78
TCOF1-203ENST00000394269 CMAHPQ9Y471 501 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 TEX51A0A1B0GUA7 166 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 H3BMH7 237 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ARHGEF9O43307 516 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ATP6V1G1O75348 118 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ARMC4Q5T2S8 1044 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 OR1N1Q8NGS0 311 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 KISS1RQ969F8 398 aaPredicted RBP10.16□□□□□ -0.78
TCOF1-203ENST00000394269 HOXD1Q9GZZ0 328 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 ADGRL4Q9HBW9 690 aa10.16□□□□□ -0.78
TCOF1-203ENST00000394269 EXOGQ9Y2C4 368 aaKnown RBP10.16□□□□□ -0.78
TCOF1-203ENST00000394269 IGKV1D-42A0A075B6H8 117 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 SHISA8B8ZZ34 492 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 HPGDSO60760 199 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 SPNP16150 400 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 MST1P26927 711 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 RBM34P42696 430 aaKnown RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 MAGEB1P43366 347 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 BIKQ13323 160 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 WDR74Q6RFH5 385 aaPredicted RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 UBALD2Q8IYN6 164 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 HOXB13Q92826 284 aaPredicted RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 HPS1Q92902 700 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 TAAR8Q969N4 342 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 PDCD1LG2Q9BQ51 273 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 GRHPRQ9UBQ7 328 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 ING1Q9UK53 422 aaPredicted RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 GTF2A1LQ9UNN4 478 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 SF3B6Q9Y3B4 125 aaKnown RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 IGKV3D-11A0A0A0MRZ8 115 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 IGHV5-10-1A0A0J9YXX1 117 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 FRG2CA6NGY1 282 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 TAF4O00268 1085 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 RNF13O43567 381 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 PPM1BO75688 479 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 OR7A10O76100 309 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 CDKN2AP42771 156 aaKnown RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 EMP2P54851 167 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 BAK1Q16611 211 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 DDI2Q5TDH0 399 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 LCN10Q6JVE6 187 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 SAP25Q8TEE9 199 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 ASB15Q8WXK1 588 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 GHSRQ92847 366 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 CRB3Q9BUF7 120 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 ZNF426Q9BUY5 554 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 DUSP23Q9BVJ7 150 aa10.15□□□□□ -0.78
TCOF1-203ENST00000394269 PPIL3Q9H2H8 161 aaKnown RBP10.15□□□□□ -0.78
TCOF1-203ENST00000394269 IGHA1P01876 353 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 APOA1P02647 267 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 LIMK1P53667 647 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 RNF4P78317 190 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 ACY1Q03154 408 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 FHL1Q13642 323 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 GALEQ14376 348 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 PAPD4Q6PIY7 484 aaKnown RBP10.14□□□□□ -0.79
TCOF1-203ENST00000394269 PPP1R3BQ86XI6 285 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 CMIPQ8IY22 773 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 LSM14AQ8ND56 463 aaKnown RBP10.14□□□□□ -0.79
TCOF1-203ENST00000394269 OR14A16Q8NHC5 309 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 LPAR4Q99677 370 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 NEURL2Q9BR09 285 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 ZNF649Q9BS31 505 aa10.14□□□□□ -0.79
TCOF1-203ENST00000394269 ZNF768Q9H5H4 540 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms