RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RAP1BP61224 184 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 BAXQ07812 192 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ASAH1Q13510 395 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 BPHLQ86WA6 291 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 CDH26Q8IXH8 852 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 CLRN3Q8NCR9 226 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 FABP1P07148 127 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 IGSF11Q5DX21 431 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 KCTD11Q693B1 232 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ACVR1CQ8NER5 493 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ZMAT5Q9UDW3 170 aaKnown RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 MYOM1P52179 1685 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 C17orf112F2Z3M2 114 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 GPRIN2O60269 458 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 SLC16A7O60669 478 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 NXPH3O95157 252 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 GIPP09681 153 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 THBS3P49746 956 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF266Q14584 549 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 MPEG1Q2M385 716 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 TBPL2Q6SJ96 375 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 KIAA0907Q7Z7F0 614 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 OR8U1Q8NH10 309 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ZIC5Q96T25 663 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 SLC22A11Q9NSA0 550 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF443Q9Y2A4 671 aaPredicted RBP11.06□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF337Q9Y3M9 751 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 A3GALT2U3KPV4 340 aa11.06□□□□□ -0.64
SYNPO-202ENST00000394243 A0A0U1RQS6 177 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 KDM4EB2RXH2 506 aaPredicted RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TK1P04183 234 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 EMP3P54852 163 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HBA1P69905 142 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 OR1Q1Q15612 314 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 CDRT4Q8N9R6 151 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 NECAP1Q8NC96 275 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 NEIL2Q969S2 332 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SLC25A46Q96AG3 418 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SAT2Q96F10 170 aaPredicted RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 CPPED1Q9BRF8 314 aaPredicted RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 PHOX2AO14813 284 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 PSMB3P49720 205 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SIRPAP78324 504 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TSPAN31Q12999 210 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 IAH1Q2TAA2 248 aaPredicted RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HENMT1Q5T8I9 393 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 C15orf39Q6ZRI6 1047 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 DEFB119Q8N690 84 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 UPRTQ96BW1 309 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SGIP1Q9BQI5 828 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 LIN7BQ9HAP6 207 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 PREX1Q8TCU6 1659 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 IRF2P14316 349 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF28P17035 718 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HBG1P69891 147 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HBG2P69892 147 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 RING1Q06587 406 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SLC10A1Q14973 349 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SYPL1Q16563 259 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 MAVSQ7Z434 540 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 C15orf54Q8N8G6 183 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 RELL2Q8NC24 303 aaPredicted RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 OR6M1Q8NGM8 313 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 OR13C2Q8NGS9 318 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SLC25A32Q9H2D1 315 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ZMAT3Q9HA38 289 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF724A8MTY0 619 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ATP1B1P05026 303 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HOXB2P14652 356 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HTR2CP28335 458 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 MSMO1Q15800 293 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TSTD1Q8NFU3 115 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SCLYQ96I15 445 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 FAM103A1Q9BTL3 118 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 OR10A5Q9H207 317 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 OR10A2Q9H208 303 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 DIMT1Q9UNQ2 313 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 CORINQ9Y5Q5 1042 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ADH1BP00325 375 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 LINC00299Q6ZSB3 139 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM130Q8N3G9 435 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF561Q8N587 486 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 HORMAD2Q8N7B1 307 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ZNF583Q96ND8 569 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TRDV1A0A1B0GX56 115 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 BET1O15155 118 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 CPNE6O95741 557 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TACR3P29371 465 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 SFTPDP35247 375 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 GP2P55259 537 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 UBXN2BQ14CS0 331 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 CNN3Q15417 329 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 GLYR1Q49A26 553 aaPredicted RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM31Q5JXX7 168 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 CORO6Q6QEF8 472 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 MRPL21Q7Z2W9 205 aaKnown RBP11.05□□□□□ -0.64
SYNPO-202ENST00000394243 ARV1Q9H2C2 271 aa11.05□□□□□ -0.64
SYNPO-202ENST00000394243 UNCXA6NJT0 531 aa11.04□□□□□ -0.64
SYNPO-202ENST00000394243 FAM227AF5H4B4 570 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms