RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 K7EQM0 130 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 WNT11O96014 354 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 RAB38P57729 211 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GTDC1Q4AE62 458 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CPNE4Q96A23 557 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 OR52A5Q9H2C5 316 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 AGPAT4Q9NRZ5 378 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 WASH4PA8MWX3 477 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GABRPO00591 440 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GPR75O95800 540 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF865P0CJ78 1059 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 UBE2G2P60604 165 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 OR8B8Q15620 311 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 LTC4SQ16873 150 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 WDR5BQ86VZ2 330 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CNTN4Q8IWV2 1026 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GPR26Q8NDV2 337 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 LINC00597Q9H2U6 94 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 MED17Q9NVC6 651 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ADAM29Q9UKF5 820 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 PPP3CBP16298 524 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 HOXC8P31273 242 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GABRA5P31644 462 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF140P52738 457 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CLLU1OSQ5K130 101 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 FBXO46Q6PJ61 603 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 IL20RBQ6UXL0 311 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 C15orf39Q6ZRI6 1047 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 IL17CQ9P0M4 197 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CHD2O14647 1828 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 RICTORQ6R327 1708 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 MEIOCA2RUB1 952 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CLEC3BP05452 202 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC9A3R2Q15599 337 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 MEX3DQ86XN8 651 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 LACC1Q8IV20 430 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 FAM109AQ8N4B1 249 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 MDGA1Q8NFP4 955 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 PISDQ9UG56 409 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 LRRC30A6NM36 301 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 CA3P07451 260 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 CLDN17P56750 224 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 MRPS34P82930 218 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 CDKN3Q16667 212 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC43A2Q8N370 569 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 RAB3CQ96E17 227 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ARPC5LQ9BPX5 153 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ACSS1Q9NUB1 689 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 GFOD1Q9NXC2 390 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ARNTLO00327 626 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 OR7A17O14581 309 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 FZD7O75084 574 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 KIR2DL3P43628 341 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 HNRNPFP52597 415 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 GAB1Q13480 694 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 PGAP1Q75T13 922 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 B3GNT8Q7Z7M8 397 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 GCNT2Q8N0V5 402 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF439Q8NDP4 499 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 OR5K2Q8NHB8 316 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 GON4LQ3T8J9 2241 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 TMEM82A0PJX8 343 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 LRIT2A6NDA9 550 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 DRGXA6NNA5 263 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 MRPS21P82921 87 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 SHEQ5VZ18 495 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 OR7E24Q6IFN5 339 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 SPARTQ8N0X7 666 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF454Q8N9F8 522 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF593O00488 134 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 DDAH2O95865 285 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 HOXA11P31270 313 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 PRICKLE2Q7Z3G6 844 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ST7LQ8TDW4 575 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 GNG12Q9UBI6 72 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 SCRG1O75711 98 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 DEFA4P12838 97 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 TNFRSF17Q02223 184 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 TLE1Q04724 770 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 HNF4GQ14541 408 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 B3GLCTQ6Y288 498 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 C19orf47Q8N9M1 422 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 NUDT22Q9BRQ3 303 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 WDR83Q9BRX9 315 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ADAM19Q9H013 955 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 ISYNA1Q9NPH2 558 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 KRBA1A5PL33 1030 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 BTBD17A6NE02 478 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 GPRIN2O60269 458 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 RGS11O94810 467 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 INHBCP55103 352 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 TMEM41BQ5BJD5 291 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 MRPL2Q5T653 305 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 FAM199XQ6PEV8 388 aaPredicted RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 KCTD12Q96CX2 325 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 BOD1Q96IK1 185 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 FER1L6-AS2Q96M78 137 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 FOXN4Q96NZ1 517 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 TMEM59Q9BXS4 323 aa11.92□□□□□ -0.5
CCDC88C-204ENST00000389857 E9PI62 339 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms